Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 9.2e-78 293.5 150 100.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 7.5e-64 247.3 148 81.1
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 3.5e-61 238.4 148 77.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 6.6e-60 234.2 148 77.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 2.1e-58 229.2 147 76.2
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.7e-58 228.0 147 74.1
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 4.7e-58 228.0 147 76.2
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 8.1e-58 227.3 146 74.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 8.1e-58 227.3 147 74.8
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.1e-57 226.9 147 74.1
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.4e-57 226.5 147 74.1
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.4e-57 226.5 149 73.8
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.8e-57 226.1 147 73.5
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.4e-57 225.7 147 73.5
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 4.0e-57 224.9 147 74.1
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 6.8e-57 224.2 146 74.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 8.9e-57 223.8 147 72.8
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.2e-56 223.4 148 70.9
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 3.4e-56 221.9 148 71.6
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 4.4e-56 221.5 147 72.8
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.7e-55 219.5 148 70.3
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.2e-55 219.2 148 71.6
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.2e-55 219.2 147 70.1
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 3.8e-55 218.4 148 68.9
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 4.9e-55 218.0 147 70.1
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 71.3
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.9e-54 216.1 147 72.1
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.9e-54 216.1 150 70.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.4e-54 215.7 150 68.0
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 3.2e-54 215.3 147 72.8
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 3.2e-54 215.3 148 68.2
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.2e-54 215.3 150 70.0
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 4.1e-54 214.9 147 72.1
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 4.1e-54 214.9 147 70.7
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.1e-54 214.9 147 69.4
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 68.7
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 68.7
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 7.1e-54 214.2 147 68.7
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 68.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.2e-54 213.8 147 69.4
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.2e-53 213.4 150 66.7
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.2e-53 213.4 146 69.9
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.2e-53 213.4 146 69.9
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.6e-53 213.0 148 68.2
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.7e-53 212.2 147 68.0
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 2.7e-53 212.2 147 68.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-53 212.2 147 67.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 67.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 7.8e-53 210.7 147 69.4
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 67.3
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 67.3
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.3e-52 209.9 147 67.3
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.3e-52 209.9 146 68.5
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.3e-52 209.9 148 66.9
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.7e-52 209.5 147 66.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.7e-52 209.5 146 68.5
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 67.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 67.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 66.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 3.9e-52 208.4 149 69.1
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 5.1e-52 208.0 148 64.9
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 5.1e-52 208.0 147 66.7
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 6.6e-52 207.6 147 66.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 6.6e-52 207.6 147 66.7
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 8.6e-52 207.2 148 68.9
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 8.6e-52 207.2 146 67.8
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 69.4
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.1e-51 206.8 147 68.0
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.5e-51 205.7 147 68.7
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 3.3e-51 205.3 147 68.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.3e-51 205.3 147 66.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 7.3e-51 204.1 143 65.0
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.1e-50 202.6 147 66.7
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 65.3
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 65.3
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 3.6e-50 201.8 147 66.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.7e-50 201.4 147 65.3
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 6.2e-50 201.1 159 62.3
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 8.1e-50 200.7 140 69.3
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.1e-50 200.7 147 66.0
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 8.1e-50 200.7 147 63.9
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.1e-49 200.3 147 63.9
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 66.4
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 66.4
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.4e-49 199.9 143 66.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.8e-49 199.5 148 65.5
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.8e-49 199.5 147 64.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.8e-49 199.5 159 59.7
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.4e-49 199.1 145 65.5
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.4e-49 199.1 145 65.5
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-49 198.7 147 63.9
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.1e-49 198.7 143 65.7
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 4.0e-49 198.4 143 65.7
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 66.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 5.2e-49 198.0 147 66.0
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 6.9e-49 197.6 147 66.0
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 9.0e-49 197.2 140 66.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 1.2e-48 196.8 147 65.3
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.5e-48 196.4 147 64.6
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 3.4e-48 195.3 147 65.3
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 3.4e-48 195.3 147 63.9
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.3e-47 193.4 170 59.4
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.7e-47 193.0 148 61.5
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.7e-47 193.0 219 48.4
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 2.2e-47 192.6 181 56.4
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 2.2e-47 192.6 147 63.9
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.9e-47 192.2 147 63.9
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.9e-47 192.2 147 61.9
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.8e-47 191.8 154 61.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 6.4e-47 191.0 147 63.3
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.1e-46 190.3 147 62.6
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.1e-46 190.3 149 60.4
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 1.4e-46 189.9 141 69.5
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.4e-46 189.1 157 59.2
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.4e-46 189.1 147 63.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.4e-46 189.1 140 62.9
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 7.1e-46 187.6 147 61.9
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 2.7e-45 185.7 191 53.4
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 3.5e-45 185.3 132 67.4
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 6.0e-45 184.5 158 59.5
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.7e-44 183.0 147 60.5
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.7e-44 183.0 147 64.6
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.0e-44 182.2 141 58.9
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.1e-44 181.4 141 58.9
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.1e-43 180.3 147 59.9
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.3e-43 178.7 141 58.2
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 5.6e-43 177.9 141 58.2
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.4e-41 172.6 147 53.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.4e-41 172.6 147 53.7
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.0e-41 171.8 141 56.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-40 170.2 140 55.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-40 170.2 140 55.7
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.2e-40 170.2 140 55.7
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.0e-40 169.5 141 54.6
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 3.4e-40 168.7 140 55.7
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.3e-39 166.8 137 59.1
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 3.5e-37 158.7 105 71.4
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 3.5e-37 158.7 105 71.4
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.9e-36 155.2 147 55.1
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 8.1e-34 147.5 89 78.7
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 6.9e-33 144.4 147 53.7
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 9.0e-33 144.1 148 54.1
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-32 143.3 119 56.3
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 5.8e-32 141.4 89 75.3
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.7e-31 139.8 128 57.0
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.7e-31 139.8 128 57.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 4.9e-31 138.3 105 61.9
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 8.4e-31 137.5 99 66.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.9e-30 136.3 89 73.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.4e-30 136.0 133 52.6
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 6.0e-29 131.3 103 63.1
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 7.9e-29 131.0 148 48.0
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 1.8e-28 129.8 143 47.6
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 8.2e-26 120.9 142 45.1
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.2e-24 117.1 86 59.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 2.6e-24 115.9 82 63.4
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 3.4e-24 115.5 147 46.3
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.4e-22 110.2 140 35.0
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 3.2e-22 109.0 140 40.7
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 4.2e-22 108.6 88 54.5
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.9e-20 102.1 103 49.5
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.3e-19 99.0 136 33.8
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.0e-17 90.9 147 32.0
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 3.4e-16 89.0 142 38.0
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 3.8e-15 85.5 72 58.3
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.4e-14 83.6 102 42.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.9e-14 83.2 107 33.6
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.3e-11 72.4 87 42.5
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 2.2e-10 69.7 52 61.5
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.2e-10 69.7 46 69.6
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.8e-10 69.3 129 24.8
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.1e-09 67.4 81 45.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 3.4e-08 62.4 133 24.1
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.7e-07 60.1 82 43.9
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-07 59.7 44 59.1
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.9e-06 56.6 136 24.3


User provided reference genes

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