Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 1.3e-151 539.7 273 100.0
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 4.9e-146 521.2 273 97.4
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 1.3e-125 453.4 271 83.4
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 5.9e-115 417.9 271 75.6
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.6e-112 409.8 272 73.2
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 1.4e-111 406.8 274 75.5
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 5.1e-111 404.8 271 73.1
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 8.8e-111 404.1 272 72.8
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 8.8e-111 404.1 272 75.0
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.1e-110 403.7 271 74.9
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 2.6e-110 402.5 271 72.7
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 3.3e-110 402.1 272 73.2
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 5.7e-110 401.4 271 74.2
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 7.4e-110 401.0 272 75.0
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 1.7e-109 399.8 272 75.4
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 6.3e-109 397.9 273 71.8
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 8.2e-109 397.5 270 74.8
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 8.2e-109 397.5 270 74.8
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 8.2e-109 397.5 271 73.8
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.8e-108 396.4 272 72.1
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 2.4e-108 396.0 271 74.5
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 2.4e-108 396.0 272 72.4
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 5.3e-108 394.8 272 71.7
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 9.1e-108 394.0 272 73.5
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 2.0e-107 392.9 272 73.9
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 4.5e-107 391.7 271 72.3
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 5.9e-107 391.3 272 71.0
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 5.9e-107 391.3 273 71.1
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 7.7e-107 391.0 266 72.9
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 7.7e-107 391.0 271 70.8
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 7.7e-107 391.0 272 73.2
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 2.9e-106 389.0 270 71.1
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 1.1e-105 387.1 273 70.0
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 1.4e-105 386.7 273 72.5
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 1.4e-105 386.7 271 70.1
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 1.4e-105 386.7 270 70.7
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 1.9e-105 386.3 274 71.9
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.2e-105 385.6 274 70.4
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 4.2e-105 385.2 271 69.7
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 5.5e-105 384.8 271 71.6
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 7.2e-105 384.4 271 69.4
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 9.4e-105 384.0 271 70.1
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 9.4e-105 384.0 270 70.0
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 1.6e-104 383.3 271 69.7
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 4.7e-104 381.7 271 70.5
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 6.1e-104 381.3 273 71.4
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 2.3e-103 379.4 270 71.5
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 2.3e-103 379.4 274 70.8
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 3.9e-103 378.6 274 69.7
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 5.2e-103 378.3 273 71.1
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 5.2e-103 378.3 272 69.1
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 6.7e-103 377.9 271 68.3
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 8.8e-103 377.5 271 71.2
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 2.6e-102 375.9 270 69.6
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 1.3e-101 373.6 271 70.8
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 4.8e-101 371.7 271 68.3
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 4.8e-101 371.7 271 68.6
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 6.3e-101 371.3 272 68.4
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 6.3e-101 371.3 241 74.3
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 8.2e-101 370.9 272 68.8
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 1.1e-100 370.5 271 69.0
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.8e-100 369.8 260 72.7
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 7.0e-100 367.9 274 69.0
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 1.2e-99 367.1 271 68.6
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 1.6e-99 366.7 274 67.2
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 3.5e-99 365.5 272 67.3
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 5.9e-99 364.8 273 66.7
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.0e-98 364.0 271 68.6
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.3e-98 363.6 273 70.0
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 3.8e-98 362.1 273 69.6
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 5.0e-98 361.7 271 67.9
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 8.5e-98 360.9 272 69.9
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 1.5e-97 360.1 274 67.9
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 2.5e-97 359.4 271 66.4
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 2.5e-97 359.4 272 66.2
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 2.5e-97 359.4 274 68.6
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 4.2e-97 358.6 272 69.1
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 9.4e-97 357.5 272 69.1
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 9.4e-97 357.5 271 66.4
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.1e-96 356.3 274 66.8
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 3.6e-96 355.5 272 67.6
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 3.6e-96 355.5 273 67.4
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 4.7e-96 355.1 278 67.6
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 8.0e-96 354.4 272 68.0
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 8.0e-96 354.4 275 67.3
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 1.0e-95 354.0 276 68.5
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 1.0e-95 354.0 272 66.9
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 1.8e-95 353.2 272 68.4
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 4.0e-95 352.1 272 66.5
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 4.0e-95 352.1 274 66.1
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 1.2e-94 350.5 272 66.2
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 1.2e-94 350.5 269 66.9
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 1.5e-94 350.1 270 69.3
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 2.0e-94 349.7 268 67.2
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.6e-94 349.4 274 66.1
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 7.5e-94 347.8 274 66.1
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 7.5e-94 347.8 274 66.1
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 9.7e-94 347.4 271 64.2
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 2.8e-93 345.9 272 66.9
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 3.1e-92 342.4 276 66.3
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 1.2e-91 340.5 229 73.8
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 5.9e-91 338.2 274 64.6
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 5.0e-90 335.1 270 64.1
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 2.1e-88 329.7 272 65.4
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 4.7e-88 328.6 271 61.6
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 1.4e-87 327.0 274 63.9
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 1.8e-87 326.6 274 64.6
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 3.0e-87 325.9 274 63.9
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 2.2e-85 319.7 269 61.3
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 4.8e-85 318.5 187 78.1
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 7.2e-81 304.7 273 58.2
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.6e-80 303.5 275 59.3
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 6.1e-80 301.6 270 57.0
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.8e-79 300.1 272 62.1
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 2.3e-79 299.7 270 57.8
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 8.9e-79 297.7 258 65.1
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 2.6e-78 296.2 271 55.7
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.0e-70 270.0 170 74.1
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 1.4e-68 263.8 218 62.4
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 1.0e-66 257.7 273 49.5
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 6.2e-64 248.4 205 62.4
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 7.5e-62 241.5 276 47.1
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 5.6e-57 225.3 269 45.0
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 1.2e-56 224.2 272 46.0
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 3.1e-55 219.5 276 43.1
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 4.9e-53 212.2 258 45.7
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 4.7e-48 195.7 273 41.8
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 3.1e-47 193.0 257 42.4
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 4.2e-44 182.6 144 63.2
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 1.5e-38 164.1 137 66.4
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.5e-30 137.5 110 58.2
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 2.0e-30 137.1 289 33.9
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 3.4e-30 136.3 125 52.8
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 4.9e-21 105.9 144 46.5
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.6e-19 100.9 118 53.4


User provided reference genes

Program Settings