Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.4e-60 235.3 119 100.0
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 8.7e-31 137.1 121 66.1
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 4.6e-24 114.8 118 51.7
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.5e-22 109.0 123 50.4
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.1e-20 102.1 121 48.8
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 4.1e-20 101.7 106 54.7
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.0e-18 97.1 121 47.9
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 7.2e-17 90.9 101 54.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 2.1e-16 89.4 106 52.8
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.6e-16 88.6 120 47.5
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 6.1e-16 87.8 121 48.8
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 7.9e-16 87.4 111 43.2
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 7.9e-16 87.4 105 48.6
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.4e-15 86.7 116 47.4
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.0e-15 85.5 125 44.8
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.5e-14 82.4 123 42.3
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 5.7e-14 81.3 120 45.0
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 7.4e-14 80.9 106 47.2
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 7.4e-14 80.9 125 47.2
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.7e-13 79.7 119 44.5
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.7e-13 79.7 130 39.2
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 2.2e-13 79.3 117 47.9
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.2e-13 79.3 122 45.1
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.8e-13 79.0 120 45.8
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.7e-13 78.6 74 56.8
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.7e-13 78.6 71 59.2
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 4.8e-13 78.2 130 41.5
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 4.8e-13 78.2 75 54.7
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 1.1e-12 77.0 122 44.3
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.4e-12 76.6 75 52.0
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.4e-12 76.6 130 38.5
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 3.1e-12 75.5 134 39.6
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.1e-12 75.5 132 45.5
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.1e-12 75.5 126 44.4
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.1e-12 75.1 88 45.5
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 4.1e-12 75.1 124 39.5
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.1e-12 75.1 97 48.5
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 1.2e-11 73.6 121 44.6
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.2e-11 73.6 115 40.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.0e-11 72.8 106 38.7
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.0e-11 72.8 106 38.7
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 2.6e-11 72.4 126 38.9
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 4.5e-11 71.6 76 52.6
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.5e-11 71.6 97 39.2
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 7.7e-11 70.9 130 38.5
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 7.7e-11 70.9 111 44.1
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.0e-10 70.5 118 39.8
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.0e-10 70.5 103 46.6
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.0e-10 70.5 106 37.7
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.0e-10 70.5 122 41.0
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.3e-10 70.1 137 34.3
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-10 70.1 88 48.9
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 1.3e-10 70.1 85 48.2
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.3e-10 70.1 102 45.1
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.7e-10 69.7 119 39.5
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.7e-10 69.7 95 44.2
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.7e-10 69.7 105 45.7
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.7e-10 69.7 105 45.7
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.7e-10 69.7 105 45.7
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.7e-10 69.7 125 35.2
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.2e-10 69.3 72 55.6
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 2.2e-10 69.3 100 47.0
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.9e-10 68.9 102 46.1
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 5.0e-10 68.2 115 44.3
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.0e-10 68.2 118 41.5
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 6.5e-10 67.8 140 32.9
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 6.5e-10 67.8 76 50.0
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 6.5e-10 67.8 69 52.2
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.5e-10 67.4 105 44.8
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 8.5e-10 67.4 125 35.2
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.1e-09 67.0 100 45.0
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.1e-09 67.0 93 43.0
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.4e-09 66.6 103 45.6
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.4e-09 66.6 122 37.7
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.4e-09 66.6 125 39.2
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.5e-09 65.9 97 42.3
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-09 65.9 104 45.2
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.5e-09 65.9 58 53.4
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 2.5e-09 65.9 105 42.9
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.2e-09 65.5 127 36.2
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.2e-09 65.5 137 35.0
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.2e-09 65.1 116 38.8
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 5.5e-09 64.7 120 38.3
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.5e-09 64.7 116 38.8
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 5.5e-09 64.7 100 38.0
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.5e-09 64.7 100 41.0
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 5.5e-09 64.7 84 45.2
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 7.2e-09 64.3 99 40.4
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.2e-09 64.3 104 44.2
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.2e-09 64.3 108 40.7
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 7.2e-09 64.3 100 42.0
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 7.2e-09 64.3 88 47.7
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.4e-09 63.9 80 52.5
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.4e-09 63.9 74 48.6
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 9.4e-09 63.9 76 50.0
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.2e-08 63.5 105 41.9
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 107 37.4
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.6e-08 63.2 56 51.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.6e-08 63.2 111 40.5
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.6e-08 63.2 61 50.8
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.6e-08 63.2 116 38.8
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.6e-08 63.2 116 38.8
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.6e-08 63.2 120 37.5
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 2.1e-08 62.8 61 50.8
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.7e-08 62.4 80 51.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 2.7e-08 62.4 61 49.2
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.7e-08 62.4 138 31.2
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.7e-08 62.4 76 50.0
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 4.7e-08 61.6 61 49.2
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 4.7e-08 61.6 108 37.0
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 6.1e-08 61.2 106 43.4
Cfa010131 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.4e-07 60.1 62 51.6
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.4e-07 60.1 117 36.8
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.4e-07 60.1 116 38.8
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 1.8e-07 59.7 96 38.5
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.8e-07 59.7 57 54.4
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 1.8e-07 59.7 77 50.6
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 2.3e-07 59.3 65 52.3
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 3.0e-07 58.9 132 31.8
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.9e-07 58.5 87 46.0
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 5.1e-07 58.2 99 41.4
Haze_23519 Corylus avellana HOM05D005304 ORTHO05D004438 6.7e-07 57.8 60 51.7
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 6.7e-07 57.8 107 38.3
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 6.7e-07 57.8 107 40.2
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.1e-06 57.0 84 45.2
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.5e-06 56.6 80 48.8
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.6e-06 55.8 87 43.7
Lalb_Chr03g0027791 Lupinus albus HOM05D014522 ORTHO05D004438 2.6e-06 55.8 96 38.5
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 3.3e-06 55.5 109 36.7
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 3.3e-06 55.5 57 50.9
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 4.4e-06 55.1 105 37.1
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 4.4e-06 55.1 105 37.1
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.4e-06 55.1 105 41.0
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 5.7e-06 54.7 117 36.8
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 7.4e-06 54.3 100 38.0
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 7.4e-06 54.3 76 46.1
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 9.7e-06 53.9 76 40.8
Sp1g06830 Schrenkiella parvula HOM05D010843 ORTHO05D012975 9.7e-06 53.9 81 43.2
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 9.7e-06 53.9 70 47.1


User provided reference genes

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