Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 0.0e+00 1124.0 563 100.0
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.6e-250 868.6 515 84.5
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-226 789.6 517 77.0
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.9e-224 782.7 514 76.1
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.3e-220 770.0 514 74.5
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.6e-220 769.6 511 77.3
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.7e-217 759.6 515 74.4
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 2.2e-217 759.2 514 74.5
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.6e-215 753.1 514 73.3
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 2.1e-215 752.7 531 72.3
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.8e-214 749.6 514 74.5
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 5.1e-214 748.0 517 72.1
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 2.5e-213 745.7 514 73.5
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.6e-212 743.0 514 72.8
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.6e-212 743.0 514 73.7
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.1e-212 742.7 514 73.0
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 4.8e-212 741.5 518 71.8
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 4.8e-212 741.5 513 71.9
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.1e-211 740.3 548 68.6
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.4e-211 740.0 514 72.2
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 1.4e-211 740.0 514 72.2
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.0e-211 738.4 513 71.7
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 2.6e-210 735.7 514 72.8
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 5.8e-210 734.6 514 73.5
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.7e-209 733.0 514 71.6
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.2e-209 732.6 513 70.6
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 2.9e-209 732.3 514 72.6
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 3.8e-209 731.9 514 72.8
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 8.4e-209 730.7 512 72.7
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.2e-208 728.8 499 74.3
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 7.1e-208 727.6 512 72.3
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.6e-207 724.9 513 72.1
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.0e-207 724.5 499 73.7
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 6.0e-207 724.5 512 71.5
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 2.3e-206 722.6 512 71.1
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.3e-204 716.8 514 69.8
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.1e-203 713.8 513 69.8
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.8e-203 713.0 514 69.6
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 2.4e-203 712.6 514 69.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 3.1e-203 712.2 474 74.9
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 4.1e-203 711.8 512 69.9
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 4.1e-203 711.8 514 70.2
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 5.3e-203 711.4 519 69.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.9e-203 711.1 514 71.8
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.5e-202 709.9 514 69.6
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.5e-202 709.9 513 69.8
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 4.5e-202 708.4 514 68.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 5.9e-202 708.0 514 67.5
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 3.8e-201 705.3 514 69.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 5.0e-201 704.9 512 69.3
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.2e-199 700.3 601 61.9
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 2.7e-199 699.1 499 69.9
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.8e-198 696.4 512 69.3
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.3e-198 696.0 552 65.2
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.3e-198 696.0 552 65.2
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 3.9e-198 695.3 513 70.4
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 4.3e-197 691.8 513 69.0
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.3e-197 691.8 505 69.3
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.7e-197 691.4 499 71.7
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 5.7e-197 691.4 514 68.3
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.3e-196 690.3 453 76.4
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.7e-196 689.9 491 70.7
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.7e-196 689.9 499 71.5
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.7e-196 689.9 505 68.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 4.8e-196 688.3 498 69.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 1.4e-195 686.8 513 67.1
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.1e-195 685.6 516 68.6
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 4.1e-195 685.3 513 67.3
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 6.9e-195 684.5 512 68.4
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-194 683.7 508 67.5
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.6e-194 682.6 513 68.4
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.0e-193 680.6 515 68.0
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 5.0e-193 678.3 515 67.2
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.5e-192 676.0 512 68.4
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 3.2e-192 675.6 477 71.9
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 4.2e-192 675.2 513 67.8
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.2e-192 674.5 525 68.2
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 3.6e-191 672.2 479 72.0
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 4.7e-191 671.8 513 67.3
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 4.7e-191 671.8 515 67.2
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 6.1e-191 671.4 513 67.8
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.8e-190 669.8 513 67.1
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.8e-190 669.8 513 67.1
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 3.0e-190 669.1 513 66.9
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 5.1e-190 668.3 513 67.8
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 6.7e-190 667.9 513 67.6
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 8.8e-190 667.5 513 66.9
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.5e-189 666.8 513 66.7
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.5e-189 666.8 513 67.8
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.0e-189 666.4 514 66.9
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.6e-189 666.0 521 66.0
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 4.4e-189 665.2 497 66.2
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 7.4e-189 664.5 519 67.1
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 9.7e-189 664.1 509 67.2
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-188 663.7 513 66.9
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.3e-188 663.7 514 67.1
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-188 663.7 513 66.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.7e-188 663.3 513 66.7
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 2.2e-188 662.9 566 62.2
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 4.8e-188 661.8 513 66.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.8e-187 659.8 514 66.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.4e-187 659.4 513 67.1
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 3.5e-186 655.6 472 70.1
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 7.7e-186 654.4 512 64.5
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.0e-185 654.1 517 66.0
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.4e-184 650.2 500 67.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.2e-184 648.7 513 66.5
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.0e-183 644.4 508 64.8
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.8e-182 643.3 514 63.8
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.3e-182 642.9 513 66.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 5.2e-182 641.7 588 57.7
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 2.8e-180 636.0 526 63.7
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 2.4e-179 632.9 465 69.2
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.6e-178 630.2 527 62.0
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 2.7e-175 619.4 512 62.3
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 8.8e-174 614.4 515 63.7
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 4.4e-173 612.1 505 62.8
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 4.8e-172 608.6 501 62.3
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 7.0e-171 604.7 502 61.6
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.0e-170 603.2 455 67.9
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.4e-166 590.5 514 59.9
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.4e-165 585.9 456 66.2
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.9e-162 575.1 404 70.8
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.7e-161 573.5 403 71.0
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.3e-158 563.1 649 50.1
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.5e-144 514.6 500 58.0
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 3.1e-142 509.6 538 51.5
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 3.5e-138 496.1 550 50.2
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 9.9e-133 478.0 421 58.9
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.2e-132 476.9 499 52.7
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.2e-127 461.1 458 56.6
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.1e-114 417.2 325 66.2
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 5.4e-107 392.5 280 72.1
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.4e-102 377.9 274 69.3
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-101 374.4 276 70.7
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.5e-85 321.2 211 72.5
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.2e-79 300.8 246 65.4
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 3.7e-79 300.1 241 62.7
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 4.1e-78 296.6 218 69.3
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 9.7e-72 275.4 266 56.4
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.0e-65 255.4 494 36.0
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.1e-51 208.8 520 31.3
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.7e-47 194.9 138 71.7
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.0e-44 185.7 395 33.2
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 9.8e-40 169.1 112 70.5
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.8e-38 164.9 110 75.5
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.2e-34 149.8 175 53.1
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 9.8e-32 142.5 240 40.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.9e-31 141.0 240 40.4
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.9e-30 138.3 106 70.8
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.8e-26 124.4 66 84.8
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.1e-25 120.9 180 38.3
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.0e-25 120.6 88 72.7
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.4e-17 95.5 113 47.8
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.2e-16 92.4 73 65.8
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.2e-15 88.2 187 29.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.0e-12 79.3 61 62.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 5.6e-11 73.6 86 46.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.2e-10 70.1 36 94.4
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 1.4e-06 58.9 34 76.5
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 5.4e-06 57.0 126 29.4
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 5.4e-06 57.0 84 38.1
PRCOL_00005868 Prasinoderma coloniale HOM05D000740 ORTHO05D007141 7.1e-06 56.6 170 28.8


User provided reference genes

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