Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.1e-110 403.3 204 100.0
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.6e-69 266.5 194 72.7
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 4.8e-69 265.0 195 72.3
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 8.1e-69 264.2 190 72.6
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-68 263.5 171 76.6
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.2e-67 260.4 194 70.6
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 2.0e-67 259.6 194 69.6
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 4.4e-67 258.5 151 84.1
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 5.8e-67 258.1 173 73.4
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 7.6e-67 257.7 181 72.9
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.6e-67 257.7 173 73.4
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.7e-66 256.5 173 72.8
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.7e-66 256.5 194 70.6
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 2.9e-66 255.8 189 73.0
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.9e-66 255.0 190 71.1
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 6.4e-66 254.6 157 83.4
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 8.4e-66 254.2 191 69.1
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 8.4e-66 254.2 177 73.4
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.1e-65 253.8 159 80.5
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.1e-65 253.8 159 81.1
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.4e-65 252.7 177 72.9
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 4.2e-65 251.9 193 70.5
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 5.4e-65 251.5 197 68.5
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 5.4e-65 251.5 190 73.7
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 9.3e-65 250.8 162 78.4
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 9.3e-65 250.8 177 73.4
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.2e-64 250.4 175 74.9
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 1.2e-64 250.4 193 69.4
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.2e-64 250.4 152 80.9
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 2.7e-64 249.2 186 70.4
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 2.7e-64 249.2 192 68.2
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.7e-64 249.2 190 68.4
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 4.6e-64 248.4 159 76.7
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 6.0e-64 248.1 195 69.7
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 7.9e-64 247.7 176 72.2
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.0e-63 247.3 163 74.8
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.0e-63 247.3 158 76.6
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.3e-63 246.9 150 84.0
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 1.3e-63 246.9 159 78.0
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 1.3e-63 246.9 165 77.6
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.3e-63 246.9 157 77.7
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.7e-63 246.5 193 66.8
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.7e-63 246.5 157 77.7
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.7e-63 246.5 199 68.3
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.3e-63 246.1 157 79.0
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 2.3e-63 246.1 158 79.7
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-63 245.7 157 77.1
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.0e-63 245.7 157 77.1
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 3.0e-63 245.7 150 80.0
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 3.0e-63 245.7 151 80.8
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 3.9e-63 245.4 174 70.7
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 6.6e-63 244.6 194 69.1
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 8.7e-63 244.2 161 75.2
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 8.7e-63 244.2 157 79.0
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.5e-62 243.4 170 72.9
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 5.6e-62 241.5 188 66.5
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 5.6e-62 241.5 199 65.3
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 3.6e-61 238.8 189 66.1
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 8.1e-61 237.7 171 67.3
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.1e-60 237.3 161 73.9
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.1e-60 237.3 185 69.2
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.4e-60 236.9 176 70.5
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.8e-60 236.5 165 72.7
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.4e-60 236.1 171 66.7
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 3.1e-60 235.7 148 77.7
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 6.9e-60 234.6 183 66.1
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 6.9e-60 234.6 176 69.3
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 9.0e-60 234.2 158 72.2
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.5e-59 233.4 176 69.3
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 3.8e-58 228.8 157 73.9
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.4e-57 226.9 159 71.7
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 4.2e-57 225.3 186 64.5
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 5.5e-57 224.9 186 62.4
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 5.5e-57 224.9 148 75.7
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 1.6e-56 223.4 171 69.0
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 2.1e-56 223.0 150 74.7
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.5e-56 222.2 157 73.2
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 3.5e-56 222.2 156 71.2
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 4.6e-56 221.9 184 61.4
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 4.6e-56 221.9 186 61.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.3e-55 220.3 152 73.0
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 8.7e-55 217.6 170 64.1
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.1e-54 217.2 182 63.7
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 4.3e-54 215.3 161 65.2
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 5.6e-54 214.9 170 63.5
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.8e-53 211.8 187 59.4
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 8.1e-53 211.1 147 69.4
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 8.1e-53 211.1 147 69.4
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 2.4e-52 209.5 145 69.7
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 3.1e-52 209.1 172 61.6
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 5.3e-52 208.4 146 67.1
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 9.0e-52 207.6 154 66.2
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.5e-51 206.8 183 59.0
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.5e-51 206.8 150 69.3
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 2.6e-51 206.1 183 57.9
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 2.6e-51 206.1 183 57.9
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 2.6e-51 206.1 183 57.9
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 3.4e-51 205.7 183 57.4
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 3.4e-51 205.7 183 57.4
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.5e-51 205.3 163 66.3
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 4.5e-51 205.3 163 66.3
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 4.9e-50 201.8 149 66.4
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 3.2e-49 199.1 175 61.7
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 4.2e-49 198.7 128 75.8
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 5.5e-49 198.4 193 61.7
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 7.1e-49 198.0 142 67.6
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 1.6e-48 196.8 126 73.8
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 5.1e-47 191.8 127 74.8
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.1e-46 190.7 126 73.0
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.1e-46 190.7 126 73.0
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.9e-46 189.9 126 72.2
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.3e-45 187.2 128 74.2
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 3.7e-45 185.7 151 62.9
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 8.2e-45 184.5 127 71.7
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 6.9e-44 181.4 127 74.0
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 3.4e-43 179.1 170 55.9
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.0e-42 177.6 119 73.9
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.7e-42 176.8 127 70.1
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 6.5e-42 174.9 127 68.5
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 3.2e-41 172.6 127 69.3
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 3.2e-41 172.6 125 71.2
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 4.2e-41 172.2 151 57.0
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 5.5e-41 171.8 127 64.6
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 7.2e-41 171.4 127 70.1
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.6e-40 168.7 106 78.3
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.3e-39 167.2 106 77.4
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 2.3e-39 166.4 127 66.9
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 5.1e-39 165.2 127 62.2
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 6.7e-39 164.9 106 78.3
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 8.7e-39 164.5 126 62.7
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 7.4e-38 161.4 127 63.0
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 9.7e-38 161.0 112 77.7
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.6e-37 160.2 150 59.3
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.6e-37 160.2 150 59.3
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.2e-37 159.8 106 74.5
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 6.3e-37 158.3 154 53.9
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 8.2e-37 157.9 107 70.1
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 1.1e-36 157.5 163 50.9
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.0e-31 141.0 87 81.6
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 4.3e-30 135.6 131 52.7
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 7.4e-30 134.8 107 60.7
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 5.3e-28 128.6 150 48.7
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 5.3e-28 128.6 150 48.7
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.5e-27 127.1 150 48.0
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.0e-26 124.4 88 71.6
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.3e-26 124.0 98 63.3
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 8.0e-16 88.2 135 36.3
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 3.7e-13 79.3 67 64.2
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.8e-13 79.0 67 64.2
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.0e-10 71.2 73 52.1
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 4.7e-08 62.4 152 32.9


User provided reference genes

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