Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 7.1e-162 573.9 304 100.0
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 7.1e-162 573.9 304 100.0
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 7.4e-143 510.8 304 87.2
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 7.4e-143 510.8 304 87.2
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.4e-136 490.0 304 86.2
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 2.9e-131 472.2 304 82.6
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.5e-130 469.9 293 84.0
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.3e-128 462.6 290 83.8
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 6.3e-126 454.5 304 78.3
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.1e-125 453.8 304 78.3
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 1.8e-125 453.0 304 77.3
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 7.0e-125 451.1 303 76.9
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 7.0e-125 451.1 303 76.9
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 77.3
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 2.2e-123 446.0 297 80.5
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 6.5e-123 444.5 296 80.1
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.1e-122 443.7 300 78.7
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.1e-122 443.7 304 77.3
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 1.5e-122 443.4 304 75.7
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 5.5e-122 441.4 304 76.3
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 7.2e-122 441.0 304 77.3
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.1e-121 439.5 290 79.3
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 2.7e-121 439.1 290 78.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 1.4e-120 436.8 304 75.7
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 1.4e-120 436.8 298 76.5
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 1.8e-120 436.4 304 76.0
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 1.8e-120 436.4 299 77.3
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 3.0e-120 435.6 294 77.2
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 4.0e-120 435.3 304 75.3
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 5.2e-120 434.9 300 76.7
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 5.2e-120 434.9 294 76.9
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 8.8e-120 434.1 304 73.0
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 8.8e-120 434.1 304 74.7
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 8.8e-120 434.1 293 78.5
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 2.0e-119 433.0 292 76.7
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 4.4e-119 431.8 304 73.7
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 5.7e-119 431.4 304 73.7
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 5.7e-119 431.4 290 78.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 9.7e-119 430.6 304 74.3
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 9.7e-119 430.6 304 75.3
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.3e-118 430.3 304 75.7
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 3.7e-118 428.7 305 74.8
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 73.4
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 72.0
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 74.7
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 4.8e-118 428.3 304 74.3
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 8.3e-118 427.6 305 74.4
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.1e-117 427.2 305 74.4
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.1e-117 427.2 304 72.4
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.1e-117 427.2 304 72.4
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.8e-117 426.4 293 78.5
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 1.8e-117 426.4 290 77.2
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 1.8e-117 426.4 293 76.8
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 1.8e-117 426.4 304 73.7
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 9.1e-117 424.1 290 77.2
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 1.2e-116 423.7 304 71.7
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.6e-116 423.3 305 73.4
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 1.6e-116 423.3 304 71.7
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.6e-116 423.3 295 77.6
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.6e-116 423.3 304 71.7
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 2.7e-116 422.5 304 73.7
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 5.9e-116 421.4 291 77.0
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.9e-115 419.1 304 73.7
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 3.8e-115 418.7 300 74.3
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.1e-114 417.2 305 73.8
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 1.1e-114 417.2 300 71.7
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 2.5e-114 416.0 304 72.0
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 4.2e-114 415.2 291 76.3
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 1.2e-113 413.7 291 74.9
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 2.7e-113 412.5 295 75.9
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 4.7e-113 411.8 304 72.7
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 4.7e-113 411.8 298 73.5
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 8.0e-113 411.0 292 75.3
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.0e-112 410.6 293 76.5
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.8e-112 409.8 291 74.6
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.8e-112 409.8 291 74.6
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 1.8e-112 409.8 304 74.3
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 2.3e-112 409.5 290 74.5
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.8e-112 407.9 295 75.3
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 2.6e-111 406.0 293 74.1
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 4.4e-111 405.2 290 74.8
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 1.3e-110 403.7 291 72.9
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 3.7e-110 402.1 281 74.4
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 4.8e-110 401.7 306 70.9
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.1e-109 400.6 310 68.7
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 1.4e-109 400.2 305 70.8
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 1.8e-109 399.8 304 71.4
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 2.4e-109 399.4 305 71.1
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 2.4e-109 399.4 290 73.4
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 1.2e-108 397.1 304 67.8
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.0e-108 396.4 293 73.0
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.3e-107 393.7 281 74.4
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 6.6e-107 391.3 290 71.0
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 2.5e-106 389.4 299 69.6
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 9.5e-106 387.5 290 71.7
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.6e-105 385.6 290 70.0
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.0e-104 384.0 290 68.6
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.4e-104 383.6 298 68.8
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.0e-104 382.5 281 75.4
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 2.6e-103 379.4 294 70.1
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 7.8e-100 367.9 281 73.7
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 8.6e-99 364.4 293 67.2
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.5e-98 363.6 281 68.3
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 3.3e-98 362.5 305 63.3
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 5.8e-95 351.7 273 69.2
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 2.1e-84 316.6 285 62.1
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 6.2e-81 305.1 302 57.3
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 4.4e-79 298.9 222 72.1
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 4.1e-77 292.4 295 57.6
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 1.3e-75 287.3 194 77.8
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.0e-72 275.8 197 75.6
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 5.2e-72 275.4 292 55.5
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 4.6e-68 262.3 291 51.9
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 7.3e-66 255.0 202 67.8
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 8.1e-65 251.5 163 77.3
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 3.1e-64 249.6 195 68.7
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 1.7e-59 233.8 159 78.6
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 3.9e-59 232.6 338 44.4
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 7.6e-55 218.4 297 48.8
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 3.5e-52 209.5 139 78.4
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 1.8e-48 197.2 142 70.4
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 1.2e-44 184.5 233 51.5
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 4.1e-40 169.5 211 47.4
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 2.0e-39 167.2 116 78.4
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 3.4e-39 166.4 186 53.8
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 6.7e-35 152.1 182 45.1
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 4.8e-33 146.0 97 75.3
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 6.3e-33 145.6 158 55.1
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.7e-30 137.5 99 67.7
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.9e-29 134.0 96 77.1
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 1.7e-22 110.9 296 30.4
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.7e-20 102.8 86 65.1
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 1.4e-16 91.3 177 36.7
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.8e-16 90.9 302 28.5
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 5.3e-16 89.4 60 71.7
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 2.0e-15 87.4 82 54.9
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 4.5e-15 86.3 85 64.7
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 3.2e-13 80.1 150 38.7
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 5.5e-13 79.3 40 87.5
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 5.9e-07 59.3 56 55.4


User provided reference genes

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