Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13633 Nelumbo nucifera HOM05D003378 ORTHO05D003942 5.3e-60 234.2 120 100.0
TAR369G0131 Trochodendron aralioides HOM05D003378 ORTHO05D003942 1.5e-46 189.5 110 87.3
Duzib128G1405 Durio zibethinus HOM05D003378 ORTHO05D003942 3.3e-46 188.3 110 87.3
GSVIVG01033998001 Vitis vinifera HOM05D003378 ORTHO05D003942 2.2e-45 185.7 110 84.5
Aqoxy2G00958 Aquilegia oxysepala HOM05D003378 ORTHO05D003942 3.7e-45 184.9 110 83.6
Duzib106G1409 Durio zibethinus HOM05D003378 ORTHO05D003942 3.7e-45 184.9 110 86.4
TAR623G0363 Trochodendron aralioides HOM05D003378 ORTHO05D003942 3.7e-45 184.9 110 87.3
Manes.08G089250 Manihot esculenta HOM05D003378 ORTHO05D003942 4.8e-45 184.5 110 84.5
Atru.chr8.2207 Acer truncatum HOM05D003378 ORTHO05D003942 6.3e-45 184.1 110 83.6
TWI77G0412 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 6.3e-45 184.1 110 81.8
Gohir.D01G215500 Gossypium hirsutum HOM05D003378 ORTHO05D003942 8.2e-45 183.7 110 84.5
Thecc.05G020500 Theobroma cacao HOM05D003378 ORTHO05D003942 1.4e-44 183.0 110 84.5
COL.COLO4_14573 Corchorus olitorius HOM05D003378 ORTHO05D003942 1.8e-44 182.6 110 83.6
Manes.09G103000 Manihot esculenta HOM05D003378 ORTHO05D003942 1.8e-44 182.6 110 84.5
Gohir.A01G225800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 3.1e-44 181.8 110 82.7
Gorai.002G261700 Gossypium raimondii HOM05D003378 ORTHO05D003942 3.1e-44 181.8 110 82.7
PGR031G3689 Punica granatum HOM05D003378 ORTHO05D003942 3.1e-44 181.8 110 82.7
Duzib093G0826 Durio zibethinus HOM05D003378 ORTHO05D003942 4.1e-44 181.4 110 84.5
Oeu030526.1 Olea europaea HOM05D003378 ORTHO05D003942 4.1e-44 181.4 110 81.8
AUR62020689 Chenopodium quinoa HOM05D003378 ORTHO05D003942 5.3e-44 181.0 110 83.6
Oeu015017.1 Olea europaea HOM05D003378 ORTHO05D003942 5.3e-44 181.0 110 82.7
Eucgr.A00516 Eucalyptus grandis HOM05D003378 ORTHO05D003942 6.9e-44 180.6 110 81.8
Sopen10g034560 Solanum pennellii HOM05D003378 ORTHO05D003942 6.9e-44 180.6 110 81.8
PGSC0003DMG400011091 Solanum tuberosum HOM05D003378 ORTHO05D003942 6.9e-44 180.6 110 81.8
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 1.2e-43 179.9 110 82.7
Gorai.012G112200 Gossypium raimondii HOM05D003378 ORTHO05D003942 1.5e-43 179.5 110 81.8
arahy.Tifrunner.gnm1.ann1.EK5UG7 Arachis hypogaea HOM05D003378 ORTHO05D003942 2.0e-43 179.1 110 82.7
CAN.G1297.6 Capsicum annuum HOM05D003378 ORTHO05D003942 2.0e-43 179.1 110 80.9
Potri.006G097600 Populus trichocarpa HOM05D003378 ORTHO05D003942 2.0e-43 179.1 110 81.8
Cfa017247 Carpinus fangiana HOM05D003378 ORTHO05D003942 2.6e-43 178.7 110 81.8
Prupe.6G271800 Prunus persica HOM05D003378 ORTHO05D003942 2.6e-43 178.7 110 83.6
Solyc10g085100.2 Solanum lycopersicum HOM05D003378 ORTHO05D003942 2.6e-43 178.7 110 80.9
CSS0046394 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 3.4e-43 178.3 110 80.9
Cpa.g.sc163.3 Carica papaya HOM05D003378 ORTHO05D003942 3.4e-43 178.3 110 82.7
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 3.4e-43 178.3 110 80.9
Nitab4.5_0004912g0010 Nicotiana tabacum HOM05D003378 ORTHO05D003942 4.5e-43 177.9 110 81.8
Hund22726 Selenicereus undatus HOM05D003378 ORTHO05D003942 4.5e-43 177.9 110 81.8
Dinv37075 Davidia involucrata HOM05D003378 ORTHO05D003942 5.9e-43 177.6 110 80.9
THA.LOC104827042 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 5.9e-43 177.6 110 82.7
AUR62025812 Chenopodium quinoa HOM05D003378 ORTHO05D003942 7.7e-43 177.2 110 81.8
Migut.L01997 Erythranthe guttata HOM05D003378 ORTHO05D003942 7.7e-43 177.2 110 80.9
Glyma.18G197600 Glycine max HOM05D003378 ORTHO05D003942 7.7e-43 177.2 110 81.8
Lalb_Chr07g0193451 Lupinus albus HOM05D003378 ORTHO05D003942 7.7e-43 177.2 110 80.9
CANSAT35G1853 Cannabis sativa HOM05D003378 ORTHO05D003942 1.0e-42 176.8 110 80.9
TPR.G1566 Trifolium pratense HOM05D003378 ORTHO05D003942 1.0e-42 176.8 110 80.9
arahy.Tifrunner.gnm1.ann1.FDLX2Z Arachis hypogaea HOM05D003378 ORTHO05D003942 1.3e-42 176.4 110 81.8
Haze_20961 Corylus avellana HOM05D003378 ORTHO05D003942 1.3e-42 176.4 110 80.9
Lsat_1_v5_gn_5_155081 Lactuca sativa HOM05D003378 ORTHO05D003942 1.3e-42 176.4 110 79.1
SalBow5G3819 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.3e-42 176.4 110 80.9
SalBow5G4142 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.3e-42 176.4 110 80.9
Ciclev10011473m.g Citrus clementina HOM05D003378 ORTHO05D003942 1.7e-42 176.0 110 80.9
Gohir.A04G088800 Gossypium hirsutum HOM05D003378 ORTHO05D003942 1.7e-42 176.0 109 81.7
HanXRQChr11g0329601 Helianthus annuus HOM05D003378 ORTHO05D003942 1.7e-42 176.0 110 79.1
Lj3C956T2 Lonicera japonica HOM05D003378 ORTHO05D003942 1.7e-42 176.0 110 80.0
DCAR_024027 Daucus carota HOM05D003378 ORTHO05D003942 2.2e-42 175.6 110 78.2
HanXRQChr10g0287061 Helianthus annuus HOM05D003378 ORTHO05D003942 2.2e-42 175.6 110 80.0
Hma1.2p1_0244F.1_g101280 Hydrangea macrophylla HOM05D003378 ORTHO05D003942 2.2e-42 175.6 110 79.1
Peaxi162Scf00009g01921 Petunia axillaris HOM05D003378 ORTHO05D003942 2.2e-42 175.6 110 80.0
Sabra16G0108300 Salix brachista HOM05D003378 ORTHO05D003942 2.2e-42 175.6 110 81.8
Actinidia13774 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.9e-42 175.3 110 80.0
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 2.9e-42 175.3 110 79.1
MD12G1161400 Malus domestica HOM05D003378 ORTHO05D003942 2.9e-42 175.3 110 80.9
Nitab4.5_0000652g0220 Nicotiana tabacum HOM05D003378 ORTHO05D003942 2.9e-42 175.3 110 80.0
Sc01g0006660 Simmondsia chinensis HOM05D003378 ORTHO05D003942 2.9e-42 175.3 110 80.9
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 3.8e-42 174.9 110 80.9
Ah.02g114930 Amaranthus hybridus HOM05D003378 ORTHO05D003942 3.8e-42 174.9 110 80.9
MSTRG.19023 Avicennia marina HOM05D003378 ORTHO05D003942 3.8e-42 174.9 110 79.1
Potri.016G112600 Populus trichocarpa HOM05D003378 ORTHO05D003942 3.8e-42 174.9 110 80.9
unitig_0.g1457 Utricularia gibba HOM05D003378 ORTHO05D003942 3.8e-42 174.9 110 79.1
MD04G1148000 Malus domestica HOM05D003378 ORTHO05D003942 5.0e-42 174.5 110 80.9
Medtr7g067340 Medicago truncatula HOM05D003378 ORTHO05D003942 5.0e-42 174.5 110 80.9
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 6.5e-42 174.1 110 78.2
ECA247G2610 Erigeron canadensis HOM05D003378 ORTHO05D003942 6.5e-42 174.1 110 80.0
Sabra06G0075100 Salix brachista HOM05D003378 ORTHO05D003942 6.5e-42 174.1 110 80.0
Rhsim05G0206900 Rhododendron simsii HOM05D003378 ORTHO05D003942 8.5e-42 173.7 110 78.2
CsaV3_3G034100 Cucumis sativus L. HOM05D003378 ORTHO05D003942 1.1e-41 173.3 110 77.3
Psat3g130760 Pisum sativum HOM05D003378 ORTHO05D003942 1.1e-41 173.3 110 80.0
vmacro08599 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 1.1e-41 173.3 110 79.1
EL10Ac5g11530 Beta vulgaris HOM05D003378 ORTHO05D003942 1.4e-41 172.9 110 80.0
Cc06_g01590 Coffea canephora HOM05D003378 ORTHO05D003942 1.4e-41 172.9 110 79.1
MELO3C009186.2 Cucumis melo HOM05D003378 ORTHO05D003942 1.4e-41 172.9 110 76.4
Glyma.01G113000 Glycine max HOM05D003378 ORTHO05D003942 1.4e-41 172.9 110 78.2
CiPaw.09G207100 Carya illinoinensis HOM05D003378 ORTHO05D003942 1.9e-41 172.6 110 77.3
ECA248G0513 Erigeron canadensis HOM05D003378 ORTHO05D003942 1.9e-41 172.6 110 77.3
Psat7g247920 Pisum sativum HOM05D003378 ORTHO05D003942 1.9e-41 172.6 110 77.3
RcHm_v2.0_Chr3g0463701 Rosa chinensis HOM05D003378 ORTHO05D003942 2.5e-41 172.2 110 80.9
THA.LOC104823284 Tarenaya hassleriana HOM05D003378 ORTHO05D003942 2.5e-41 172.2 110 80.0
DCAR_028819 Daucus carota HOM05D003378 ORTHO05D003942 3.2e-41 171.8 110 78.2
Glyma.03G078300 Glycine max HOM05D003378 ORTHO05D003942 3.2e-41 171.8 110 77.3
Gohir.D04G129200 Gossypium hirsutum HOM05D003378 ORTHO05D003942 3.2e-41 171.8 110 79.1
CSS0025489 Camellia sinensis var. sinensis HOM05D003378 ORTHO05D003942 4.2e-41 171.4 110 78.2
Glyma.07G146400 Glycine max HOM05D003378 ORTHO05D003942 4.2e-41 171.4 110 80.0
Lsat_1_v5_gn_9_36000 Lactuca sativa HOM05D003378 ORTHO05D003942 4.2e-41 171.4 110 78.2
Lj2C81T6 Lonicera japonica HOM05D003378 ORTHO05D003942 4.2e-41 171.4 110 79.1
TWI53G0359 Tripterygium wilfordii HOM05D003378 ORTHO05D003942 4.2e-41 171.4 110 79.1
Lj3g0001695 Lotus japonicus HOM05D003378 ORTHO05D003942 5.5e-41 171.0 110 78.2
Phvul.008G106900 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 5.5e-41 171.0 110 79.1
Phvul.010G005100 Phaseolus vulgaris HOM05D003378 ORTHO05D003942 5.5e-41 171.0 110 78.2
SalBow4G2524 Salvia bowleyana HOM05D003378 ORTHO05D003942 5.5e-41 171.0 110 75.5
Ca_07617_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 7.2e-41 170.6 110 79.1
Sed0023271 Sechium edule HOM05D003378 ORTHO05D003942 9.4e-41 170.2 110 77.3
ClCG10G021890 Citrullus lanatus HOM05D003378 ORTHO05D003942 1.2e-40 169.9 110 76.4
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 1.2e-40 169.9 110 76.4
SalBow4G1026 Salvia bowleyana HOM05D003378 ORTHO05D003942 1.2e-40 169.9 110 75.5
TPR.G15969 Trifolium pratense HOM05D003378 ORTHO05D003942 1.2e-40 169.9 110 75.5
vmacro22553 Vaccinium macrocarpon HOM05D003378 ORTHO05D003942 1.6e-40 169.5 110 76.4
Zm00001eb335670 Zea mays HOM05D003378 ORTHO05D003942 1.6e-40 169.5 110 74.5
Ca_20313_v3 Cicer arietinum L. HOM05D003378 ORTHO05D003942 2.1e-40 169.1 110 78.2
Nitab4.5_0000008g0880 Nicotiana tabacum HOM05D003378 ORTHO05D003942 2.1e-40 169.1 110 75.5
SGA_v2.0_scaffold85G26755 Striga asiatica HOM05D003378 ORTHO05D003942 2.1e-40 169.1 110 74.5
unitig_88.g27657 Utricularia gibba HOM05D003378 ORTHO05D003942 2.1e-40 169.1 110 77.3
CAN.G355.3 Capsicum annuum HOM05D003378 ORTHO05D003942 2.7e-40 168.7 110 74.5
Lalb_Chr03g0043071 Lupinus albus HOM05D003378 ORTHO05D003942 2.7e-40 168.7 110 77.3
VMungo0331G1068 Vigna mungo HOM05D003378 ORTHO05D003942 2.7e-40 168.7 110 77.3
Zm00001eb297970 Zea mays HOM05D003378 ORTHO05D003942 2.7e-40 168.7 110 77.3
Aa31LG1G22850 Aethionema arabicum HOM05D003378 ORTHO05D003942 3.6e-40 168.3 110 76.4
CDE02G3708 Ceratophyllum demersum HOM05D003378 ORTHO05D003942 3.6e-40 168.3 110 78.2
Os01g0142300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 3.6e-40 168.3 110 74.5
Os03g0265100 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 3.6e-40 168.3 110 76.4
PGSC0003DMG400020317 Solanum tuberosum HOM05D003378 ORTHO05D003942 3.6e-40 168.3 110 76.4
Os07g0100300 Oryza sativa ssp. japonica HOM05D003378 ORTHO05D003942 4.7e-40 167.9 110 78.2
Sopen09g007150 Solanum pennellii HOM05D003378 ORTHO05D003942 4.7e-40 167.9 110 75.5
AT5G01220 Arabidopsis thaliana HOM05D003378 ORTHO05D003942 6.1e-40 167.5 110 77.3
Solyc09g014300.3 Solanum lycopersicum HOM05D003378 ORTHO05D003942 6.1e-40 167.5 110 75.5
Migut.J00201 Erythranthe guttata HOM05D003378 ORTHO05D003942 7.9e-40 167.2 110 77.3
MBI14_g04426_MAGBIO Magnolia biondii HOM05D003378 ORTHO05D003942 7.9e-40 167.2 110 75.5
Lj1g0014660 Lotus japonicus HOM05D003378 ORTHO05D003942 1.0e-39 166.8 110 78.2
Rhsim04G0166600 Rhododendron simsii HOM05D003378 ORTHO05D003942 1.0e-39 166.8 110 76.4
Peaxi162Scf00141g00615 Petunia axillaris HOM05D003378 ORTHO05D003942 1.4e-39 166.4 110 73.6
Medtr4g015260 Medicago truncatula HOM05D003378 ORTHO05D003942 1.8e-39 166.0 110 74.5
Sed0002007 Sechium edule HOM05D003378 ORTHO05D003942 2.3e-39 165.6 110 74.5
Lalb_Chr13g0291251 Lupinus albus HOM05D003378 ORTHO05D003942 3.0e-39 165.2 110 74.5
HPP92_012629 Vanilla planifolia HOM05D003378 ORTHO05D003942 8.8e-39 163.7 110 74.5
HPP92_019420 Vanilla planifolia HOM05D003378 ORTHO05D003942 1.5e-38 162.9 110 74.5
CiPaw.10G154700 Carya illinoinensis HOM05D003378 ORTHO05D003942 5.7e-38 161.0 110 72.7
SGA_v2.0_scaffold106G30519 Striga asiatica HOM05D003378 ORTHO05D003942 7.4e-38 160.6 110 72.7
PSO339G6012 Papaver somniferum HOM05D003378 ORTHO05D003942 1.7e-37 159.5 110 71.8
PSO801G0661 Papaver somniferum HOM05D003378 ORTHO05D003942 1.7e-37 159.5 110 71.8
SEGI_03332 Sequoiadendron giganteum HOM05D003378 ORTHO05D003942 2.8e-37 158.7 110 70.9
BcaNung02769 Brassica carinata HOM05D003378 ORTHO05D003942 8.2e-37 157.1 110 72.7
BolC9t60189H Brassica oleracea HOM05D003378 ORTHO05D003942 8.2e-37 157.1 110 72.7
FAN02G2254 Fragaria x ananassa HOM05D003378 ORTHO05D003942 1.2e-35 153.3 110 72.7
FAN14G4021 Fragaria x ananassa HOM05D003378 ORTHO05D003942 7.7e-35 150.6 110 70.9
Carub.0006s0067 Capsella rubella HOM05D003378 ORTHO05D003942 2.2e-34 149.1 110 70.0
FvH4_6g11930 Fragaria vesca HOM05D003378 ORTHO05D003942 2.2e-34 149.1 110 70.9
FAN05G4401 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.2e-34 149.1 110 70.9
FAN09G0987 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.2e-34 149.1 110 70.9
FAN14G4776 Fragaria x ananassa HOM05D003378 ORTHO05D003942 2.2e-34 149.1 110 70.9
A03p00390 Brassica napus HOM05D003378 ORTHO05D003942 2.9e-34 148.7 110 70.9
BraA03t09430Z Brassica rapa HOM05D003378 ORTHO05D003942 2.9e-34 148.7 110 70.9
AL6G10970 Arabidopsis lyrata HOM05D003378 ORTHO05D003942 5.0e-34 147.9 110 70.0
BcaB01g06094 Brassica carinata HOM05D003378 ORTHO05D003942 5.0e-34 147.9 110 70.0
C03p00550 Brassica napus HOM05D003378 ORTHO05D003942 5.0e-34 147.9 110 70.0
BolC3t12621H Brassica oleracea HOM05D003378 ORTHO05D003942 5.0e-34 147.9 110 70.0
Thhalv10013276m.g Eutrema salsugineum HOM05D003378 ORTHO05D003942 8.5e-34 147.1 110 70.0
Sp6g40570 Schrenkiella parvula HOM05D003378 ORTHO05D003942 1.1e-33 146.7 110 70.0
C09p74570 Brassica napus HOM05D003378 ORTHO05D003942 1.4e-33 146.4 110 69.1
CARHR211550 Cardamine hirsuta HOM05D003378 ORTHO05D003942 2.5e-33 145.6 110 68.2
BcaC06g31967 Brassica carinata HOM05D003378 ORTHO05D003942 4.2e-33 144.8 110 70.0
A10p33660 Brassica napus HOM05D003378 ORTHO05D003942 4.2e-33 144.8 110 68.2
Pp3c9_8520 Physcomitrium patens HOM05D003378 ORTHO05D003942 2.1e-32 142.5 110 68.2
Mapoly0129s0040 Marchantia polymorpha HOM05D003378 ORTHO05D003942 8.0e-32 140.6 109 67.0
Pp3c15_4410 Physcomitrium patens HOM05D003378 ORTHO05D003942 1.0e-31 140.2 110 65.5
AagrBONN_evm.TU.Sc2ySwM_228.713 Anthoceros agrestis HOM05D003378 ORTHO05D003942 3.0e-31 138.7 110 62.7
SMO118G0052 Selaginella moellendorffii HOM05D003378 ORTHO05D003942 8.2e-29 130.6 110 61.8
Cre01.g038550 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 5.9e-27 124.4 109 58.7
Zm00001eb011720 Zea mays HOM05D003378 ORTHO05D003942 7.2e-25 117.5 70 85.7
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 6.7e-23 110.9 104 53.8
CBR_g3329 Chara braunii HOM05D003378 ORTHO05D003942 1.1e-20 103.6 105 54.3
Cre16.g689150 Chlamydomonas reinhardtii HOM05D003378 ORTHO05D003942 2.0e-19 99.4 144 41.7
TPR.G1586 Trifolium pratense HOM05D003378 ORTHO05D003942 3.2e-17 92.0 59 74.6
MCO07G378 Micromonas commoda HOM05D003378 ORTHO05D003942 1.6e-16 89.7 99 49.5
BcaC06g31965 Brassica carinata HOM05D003378 ORTHO05D003942 2.7e-16 89.0 110 50.9
Cfa022298 Carpinus fangiana HOM05D003378 ORTHO05D003942 4.4e-14 81.6 98 44.9
CSS0033891 Camellia sinensis var. sinensis HOM05D004627 ORTHO05D005745 6.8e-07 57.8 98 35.7
Eucgr.J03011 Eucalyptus grandis HOM05D004627 ORTHO05D005745 1.2e-06 57.0 98 35.7
Nn2g11403 Nelumbo nucifera HOM05D003378 ORTHO05D003942 2.0e-06 56.2 32 81.2
vmacro18928 Vaccinium macrocarpon HOM05D004627 ORTHO05D005745 3.4e-06 55.5 98 36.7
FAN05G4220 Fragaria x ananassa HOM05D004627 ORTHO05D005745 5.7e-06 54.7 101 35.6
FvH4_6g30940 Fragaria vesca HOM05D004627 ORTHO05D005745 7.5e-06 54.3 92 38.0
PRCOL_00006760 Prasinoderma coloniale HOM05D003378 ORTHO05D049231 9.8e-06 53.9 98 35.7


User provided reference genes

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