Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13593 Nelumbo nucifera HOM05D000827 ORTHO05D022146 1.4e-10 68.2 34 100.0
Nn1g07395 Nelumbo nucifera HOM05D000827 ORTHO05D001576 4.6e-09 63.2 33 97.0
TAR626G0283 Trochodendron aralioides HOM05D000827 ORTHO05D001576 1.1e-07 58.5 33 87.9
TWI38G1318 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 1.9e-07 57.8 33 87.9
TAR627G0441 Trochodendron aralioides HOM05D000827 ORTHO05D001576 1.9e-07 57.8 33 84.8
TAR627G1209 Trochodendron aralioides HOM05D000827 ORTHO05D001576 1.9e-07 57.8 33 84.8
Prupe.4G010100 Prunus persica HOM05D000827 ORTHO05D001576 2.5e-07 57.4 33 87.9
TAR629G3131 Trochodendron aralioides HOM05D000827 ORTHO05D001576 2.5e-07 57.4 33 84.8
Dinv13968 Davidia involucrata HOM05D000827 ORTHO05D001576 4.3e-07 56.6 33 84.8
Oeu009392.1 Olea europaea HOM05D000827 ORTHO05D001576 4.3e-07 56.6 33 84.8
RcHm_v2.0_Chr5g0001471 Rosa chinensis HOM05D000827 ORTHO05D001576 5.6e-07 56.2 33 84.8
vmacro15761 Vaccinium macrocarpon HOM05D000827 ORTHO05D001576 5.6e-07 56.2 33 81.8
CSS0017282 Camellia sinensis var. sinensis HOM05D000827 ORTHO05D022146 7.3e-07 55.8 33 81.8
TWI63G0892 Tripterygium wilfordii HOM05D000827 ORTHO05D001576 7.3e-07 55.8 33 84.8
Cpa.g.sc75.114 Carica papaya HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 84.8
FvH4_3g00950 Fragaria vesca HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 84.8
FAN21G1683 Fragaria x ananassa HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 84.8
FAN25G2911 Fragaria x ananassa HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 84.8
Manes.08G070900 Manihot esculenta HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 81.8
Nitab4.5_0000143g0210 Nicotiana tabacum HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 84.8
Potri.016G013400 Populus trichocarpa HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 81.8
Rhsim02G0099300 Rhododendron simsii HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 81.8
PGSC0003DMG400013280 Solanum tuberosum HOM05D000827 ORTHO05D001576 9.5e-07 55.5 33 84.8
Cfa000097 Carpinus fangiana HOM05D000827 ORTHO05D001576 1.2e-06 55.1 33 81.8
Haze_06928 Corylus avellana HOM05D000827 ORTHO05D001576 1.2e-06 55.1 33 81.8
Haze_06935 Corylus avellana HOM05D000827 ORTHO05D001576 1.2e-06 55.1 33 81.8
Manes.09G076605 Manihot esculenta HOM05D000827 ORTHO05D001576 1.2e-06 55.1 33 78.8
Sabra16G0002000 Salix brachista HOM05D000827 ORTHO05D001576 1.2e-06 55.1 33 78.8
Sabra16G0016000 Salix brachista HOM05D000827 ORTHO05D001576 1.2e-06 55.1 33 78.8
Dinv07406 Davidia involucrata HOM05D000827 ORTHO05D001576 1.6e-06 54.7 33 81.8
Duzib235G0579 Durio zibethinus HOM05D000827 ORTHO05D001576 1.6e-06 54.7 33 78.8
Lj1C1240G4 Lonicera japonica HOM05D000827 ORTHO05D001576 1.6e-06 54.7 33 81.8
Sc05g0009600 Simmondsia chinensis HOM05D000827 ORTHO05D001576 1.6e-06 54.7 33 78.8
SGA_v2.0_scaffold4G01873 Striga asiatica HOM05D000827 ORTHO05D001576 1.6e-06 54.7 33 78.8
Actinidia11887 Actinidia chinensis HOM05D000827 ORTHO05D001576 2.1e-06 54.3 33 78.8
MSTRG.7167 Avicennia marina HOM05D000827 ORTHO05D001576 2.1e-06 54.3 33 81.8
Migut.M01398 Erythranthe guttata HOM05D000827 ORTHO05D001576 2.1e-06 54.3 33 81.8
Gohir.D10G009000 Gossypium hirsutum HOM05D000827 ORTHO05D001576 2.1e-06 54.3 33 81.8
Gorai.011G009800 Gossypium raimondii HOM05D000827 ORTHO05D001576 2.1e-06 54.3 33 81.8
THA.LOC104813595 Tarenaya hassleriana HOM05D000827 ORTHO05D001576 2.1e-06 54.3 33 81.8
Gohir.A10G009300 Gossypium hirsutum HOM05D000827 ORTHO05D001576 2.8e-06 53.9 33 81.8
Hma1.2p1_0657F.1_g197130 Hydrangea macrophylla HOM05D000827 ORTHO05D001576 2.8e-06 53.9 33 78.8
MD05G1358100 Malus domestica HOM05D000827 ORTHO05D001576 2.8e-06 53.9 33 81.8
Duzib160G0265 Durio zibethinus HOM05D000827 ORTHO05D001576 3.6e-06 53.5 33 75.8
Duzib192G1053 Durio zibethinus HOM05D000827 ORTHO05D001576 3.6e-06 53.5 33 75.8
Thhalv10025487m.g Eutrema salsugineum HOM05D000827 ORTHO05D001576 3.6e-06 53.5 33 75.8
Oeu016819.1 Olea europaea HOM05D000827 ORTHO05D001576 3.6e-06 53.5 33 81.8
Atru.chr1.2445 Acer truncatum HOM05D000827 ORTHO05D001576 4.7e-06 53.1 33 78.8
PGR042G2655 Punica granatum HOM05D000827 ORTHO05D001576 4.7e-06 53.1 33 78.8
GSVIVG01003340001 Vitis vinifera HOM05D000827 ORTHO05D001576 4.7e-06 53.1 33 78.8
Actinidia39271 Actinidia chinensis HOM05D000827 ORTHO05D001576 6.2e-06 52.8 33 75.8
arahy.Tifrunner.gnm1.ann1.0HJ3TW Arachis hypogaea HOM05D000827 ORTHO05D001576 6.2e-06 52.8 33 75.8
arahy.Tifrunner.gnm1.ann1.PC5DAD Arachis hypogaea HOM05D000827 ORTHO05D001576 6.2e-06 52.8 33 75.8
CARHR229270 Cardamine hirsuta HOM05D000827 ORTHO05D001576 6.2e-06 52.8 33 75.8
COL.COLO4_31888 Corchorus olitorius HOM05D000827 ORTHO05D001576 6.2e-06 52.8 33 75.8
GSVIVG01003333001 Vitis vinifera HOM05D000827 ORTHO05D001576 6.2e-06 52.8 33 75.8
Ciclev10015752m.g Citrus clementina HOM05D000827 ORTHO05D001576 8.1e-06 52.4 33 81.8
Potri.006G010700 Populus trichocarpa HOM05D000827 ORTHO05D001576 8.1e-06 52.4 33 75.8
Solyc11g012290.2 Solanum lycopersicum HOM05D000827 ORTHO05D001576 8.1e-06 52.4 33 81.8
Sopen11g007070 Solanum pennellii HOM05D000827 ORTHO05D001576 8.1e-06 52.4 33 81.8


User provided reference genes

Program Settings