Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13589 Nelumbo nucifera HOM05D000642 ORTHO05D000483 5.5e-145 517.7 277 100.0
Nn2g11348 Nelumbo nucifera HOM05D000642 ORTHO05D000483 1.4e-92 343.6 247 76.1
TAR369G0174 Trochodendron aralioides HOM05D000642 ORTHO05D000483 9.3e-68 261.2 254 63.0
TAR623G0160 Trochodendron aralioides HOM05D000642 ORTHO05D000483 3.0e-66 256.1 254 61.0
Nn2g13592 Nelumbo nucifera HOM05D000642 ORTHO05D000483 1.6e-64 250.4 250 57.2
CDE04G3700 Ceratophyllum demersum HOM05D000642 ORTHO05D000483 1.8e-55 220.3 268 52.6
Dinv14476 Davidia involucrata HOM05D000642 ORTHO05D000483 3.9e-50 202.6 252 54.0
MELO3C025877.2 Cucumis melo HOM05D000642 ORTHO05D000483 2.2e-48 196.8 271 50.6
ClCG02G019770 Citrullus lanatus HOM05D000642 ORTHO05D000483 1.1e-47 194.5 268 49.3
Cpa.g.sc112.79 Carica papaya HOM05D000642 ORTHO05D000483 4.1e-47 192.6 255 52.2
CsaV3_6G016480 Cucumis sativus L. HOM05D000642 ORTHO05D000483 1.2e-46 191.0 271 49.4
AT5G58960 Arabidopsis thaliana HOM05D000642 ORTHO05D000483 7.7e-46 188.3 249 53.0
A10p16220 Brassica napus HOM05D000642 ORTHO05D000483 1.0e-45 188.0 243 52.7
Actinidia25128 Actinidia chinensis HOM05D000642 ORTHO05D000483 1.3e-45 187.6 297 45.8
AL8G35340 Arabidopsis lyrata HOM05D000642 ORTHO05D000483 1.3e-45 187.6 248 52.0
Thecc.09G307500 Theobroma cacao HOM05D000642 ORTHO05D000483 2.2e-45 186.8 249 51.8
Manes.01G165400 Manihot esculenta HOM05D000642 ORTHO05D000483 2.9e-45 186.4 257 50.2
Potri.009G041000 Populus trichocarpa HOM05D000642 ORTHO05D000483 2.9e-45 186.4 229 55.9
Sed0025912 Sechium edule HOM05D000642 ORTHO05D000483 2.9e-45 186.4 265 49.8
BraA10t43703Z Brassica rapa HOM05D000642 ORTHO05D000483 5.0e-45 185.7 248 52.4
COL.COLO4_19085 Corchorus olitorius HOM05D000642 ORTHO05D000483 6.5e-45 185.3 249 51.0
Manes.02G122542 Manihot esculenta HOM05D000642 ORTHO05D000483 8.5e-45 184.9 192 59.9
CARHR285190 Cardamine hirsuta HOM05D000642 ORTHO05D000483 1.1e-44 184.5 261 51.0
Thhalv10013123m.g Eutrema salsugineum HOM05D000642 ORTHO05D000483 1.4e-44 184.1 262 48.5
Duzib168G1912 Durio zibethinus HOM05D000642 ORTHO05D000483 1.9e-44 183.7 269 49.4
Sabra01G0164600 Salix brachista HOM05D002694 ORTHO05D002927 2.5e-44 183.3 201 58.7
Gohir.A05G090800 Gossypium hirsutum HOM05D000642 ORTHO05D000483 3.2e-44 183.0 262 47.3
BcaB08g36303 Brassica carinata HOM05D000642 ORTHO05D000483 4.2e-44 182.6 242 52.5
C09p51160 Brassica napus HOM05D000642 ORTHO05D000483 7.2e-44 181.8 244 50.4
BcaB08g36302 Brassica carinata HOM05D000642 ORTHO05D000483 9.4e-44 181.4 242 52.5
BolC9t57978H Brassica oleracea HOM05D000642 ORTHO05D000483 9.4e-44 181.4 242 52.5
Gorai.009G094300 Gossypium raimondii HOM05D000642 ORTHO05D000483 1.6e-43 180.6 262 46.9
TWI79G0016 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 4.7e-43 179.1 248 50.8
Cfa011632 Carpinus fangiana HOM05D000642 ORTHO05D000483 1.4e-42 177.6 185 58.4
Sabra09G0028800 Salix brachista HOM05D000642 ORTHO05D000483 3.9e-42 176.0 287 47.0
Ciclev10028137m.g Citrus clementina HOM05D000642 ORTHO05D000483 5.2e-42 175.6 237 49.4
MBI05_g34818_MAGBIO Magnolia biondii HOM05D000642 ORTHO05D000483 2.0e-41 173.7 216 55.1
Solyc02g083110.1 Solanum lycopersicum HOM05D000642 ORTHO05D000483 2.6e-41 173.3 177 57.6
CSS0021421 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 3.3e-41 172.9 184 58.2
CSS0046249 Camellia sinensis var. sinensis HOM05D000642 ORTHO05D000483 3.3e-41 172.9 184 58.2
Sopen02g027870 Solanum pennellii HOM05D000642 ORTHO05D000483 7.4e-41 171.8 182 57.1
Nitab4.5_0001607g0010 Nicotiana tabacum HOM05D000642 ORTHO05D000483 2.2e-40 170.2 184 57.1
CDE07G0039 Ceratophyllum demersum HOM05D000642 ORTHO05D000483 6.3e-40 168.7 179 58.1
Haze_24237 Corylus avellana HOM05D000642 ORTHO05D000483 6.3e-40 168.7 191 55.5
Sp6g20660 Schrenkiella parvula HOM05D000642 ORTHO05D000483 6.3e-40 168.7 254 50.8
Aa31LG1G11670 Aethionema arabicum HOM05D000642 ORTHO05D000483 1.1e-39 167.9 253 49.0
Nitab4.5_0004381g0020 Nicotiana tabacum HOM05D000642 ORTHO05D000483 1.8e-39 167.2 183 56.3
PGSC0003DMG400001576 Solanum tuberosum HOM05D000642 ORTHO05D000483 4.1e-39 166.0 182 54.9
MSTRG.12662 Avicennia marina HOM05D000642 ORTHO05D000483 5.3e-39 165.6 254 46.1
Atru.chr3.4055 Acer truncatum HOM05D000642 ORTHO05D000483 9.1e-39 164.9 284 45.8
TWI31G0730 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 5.9e-38 162.2 198 54.5
CAN.G890.45 Capsicum annuum HOM05D000642 ORTHO05D000483 7.7e-38 161.8 188 53.2
Cc01_g13720 Coffea canephora HOM05D000642 ORTHO05D000483 1.7e-37 160.6 189 53.4
Gohir.D05G091800 Gossypium hirsutum HOM05D000642 ORTHO05D000483 2.9e-37 159.8 195 51.3
Actinidia08564 Actinidia chinensis HOM05D000642 ORTHO05D000483 8.5e-37 158.3 209 50.2
Carub.0008s1960 Capsella rubella HOM05D000642 ORTHO05D000483 1.9e-36 157.1 189 56.6
SalBow2G1826 Salvia bowleyana HOM05D000642 ORTHO05D000483 1.9e-36 157.1 248 46.0
CDE07G0288 Ceratophyllum demersum HOM05D000642 ORTHO05D000483 3.2e-36 156.4 190 52.1
Rhsim13G0074300 Rhododendron simsii HOM05D000642 ORTHO05D000483 4.2e-36 156.0 213 48.4
CiPaw.13G083400 Carya illinoinensis HOM05D000642 ORTHO05D000483 5.5e-36 155.6 217 46.5
Hma1.2p1_0274F.1_g110240 Hydrangea macrophylla HOM05D000642 ORTHO05D000483 1.2e-35 154.5 189 53.4
RcHm_v2.0_Chr5g0068071 Rosa chinensis HOM05D000642 ORTHO05D000483 1.2e-35 154.5 187 52.9
CANSAT54G1978 Cannabis sativa HOM05D000642 ORTHO05D000483 1.6e-35 154.1 292 41.8
Aqoxy1G00730 Aquilegia oxysepala HOM05D000642 ORTHO05D000483 2.7e-35 153.3 183 55.2
Sed0021470 Sechium edule HOM05D000642 ORTHO05D000483 4.7e-35 152.5 181 53.6
Duzib170G0858 Durio zibethinus HOM05D000642 ORTHO05D000483 1.0e-34 151.4 185 54.1
QL93p2004_0027 Quercus lobata HOM05D000642 ORTHO05D000483 1.0e-34 151.4 183 52.5
Peaxi162Scf00369g00015 Petunia axillaris HOM05D000642 ORTHO05D000483 2.3e-34 150.2 189 51.9
THA.LOC104799408 Tarenaya hassleriana HOM05D000642 ORTHO05D000483 3.0e-34 149.8 246 46.3
Lsat_1_v5_gn_5_171020 Lactuca sativa HOM05D000642 ORTHO05D000483 8.8e-34 148.3 181 50.3
ECA248G3773 Erigeron canadensis HOM05D000642 ORTHO05D000483 1.2e-33 147.9 196 51.0
Eucgr.B02281 Eucalyptus grandis HOM05D000642 ORTHO05D000483 1.2e-33 147.9 211 49.8
HanXRQChr01g0011021 Helianthus annuus HOM05D000642 ORTHO05D000483 2.6e-33 146.7 178 49.4
QL01p027406 Quercus lobata HOM05D000642 ORTHO05D000483 2.6e-33 146.7 182 52.2
Migut.N00896 Erythranthe guttata HOM05D000642 ORTHO05D000483 4.4e-33 146.0 246 45.1
Psat5g162600 Pisum sativum HOM05D000642 ORTHO05D000483 5.7e-33 145.6 190 51.6
Lsat_1_v5_gn_8_72140 Lactuca sativa HOM05D000642 ORTHO05D000483 9.7e-33 144.8 220 44.1
PGR119G0859 Punica granatum HOM05D000642 ORTHO05D000483 9.7e-33 144.8 201 50.7
Medtr3g462150 Medicago truncatula HOM05D000642 ORTHO05D000483 1.7e-32 144.1 191 50.8
DCAR_018940 Daucus carota HOM05D000642 ORTHO05D000483 2.8e-32 143.3 175 52.0
Phvul.006G063700 Phaseolus vulgaris HOM05D000642 ORTHO05D000483 2.8e-32 143.3 196 51.5
MD03G1078100 Malus domestica HOM05D000642 ORTHO05D000483 3.7e-32 142.9 195 49.2
VMungo0540G1862 Vigna mungo HOM05D000642 ORTHO05D000483 3.7e-32 142.9 197 51.3
FvH4_3g37850 Fragaria vesca HOM05D000642 ORTHO05D000483 6.3e-32 142.1 208 47.1
FAN11G0989 Fragaria x ananassa HOM05D000642 ORTHO05D000483 6.3e-32 142.1 208 47.1
Ca_14890_v3 Cicer arietinum L. HOM05D000642 ORTHO05D000483 3.1e-31 139.8 204 48.5
Lj6g0000613 Lotus japonicus HOM05D000642 ORTHO05D000483 4.1e-31 139.4 215 47.9
vmacro03002 Vaccinium macrocarpon HOM05D000642 ORTHO05D000483 4.1e-31 139.4 291 40.9
SGA_v2.0_scaffold104G30145 Striga asiatica HOM05D000642 ORTHO05D000483 7.0e-31 138.7 236 42.8
FAN21G3931 Fragaria x ananassa HOM05D000642 ORTHO05D000483 1.2e-30 137.9 207 45.9
ATR0618G350 Amborella trichopoda HOM05D000642 ORTHO05D000483 2.7e-30 136.7 260 41.9
Glyma.18G067600 Glycine max HOM05D000642 ORTHO05D000483 3.5e-30 136.3 202 48.5
PSO339G2572 Papaver somniferum HOM05D000642 ORTHO05D000483 4.5e-30 136.0 181 50.3
Lj2A1074T38 Lonicera japonica HOM05D000642 ORTHO05D000483 7.7e-30 135.2 144 61.1
HanXRQChr05g0135541 Helianthus annuus HOM05D000642 ORTHO05D000483 6.5e-29 132.1 191 45.0
Glyma.08G334700 Glycine max HOM05D000642 ORTHO05D000483 8.5e-29 131.7 198 47.5
Prupe.6G063100 Prunus persica HOM05D000642 ORTHO05D000483 2.5e-28 130.2 194 46.9
arahy.Tifrunner.gnm1.ann1.ADH1UX Arachis hypogaea HOM05D000642 ORTHO05D000483 7.2e-28 128.6 208 45.7
arahy.Tifrunner.gnm1.ann1.PIZ2VM Arachis hypogaea HOM05D000642 ORTHO05D000483 7.2e-28 128.6 208 45.7
RcHm_v2.0_Chr5g0068001 Rosa chinensis HOM05D000642 ORTHO05D000483 7.2e-28 128.6 194 47.4
FAN16G1468 Fragaria x ananassa HOM05D000642 ORTHO05D000483 9.4e-28 128.3 148 54.7
AUR62001705 Chenopodium quinoa HOM05D000642 ORTHO05D000483 1.6e-27 127.5 225 42.7
Lalb_Chr20g0115101 Lupinus albus HOM05D000642 ORTHO05D000483 1.6e-27 127.5 216 43.1
GSVIVG01024812001 Vitis vinifera HOM05D000642 ORTHO05D000483 1.6e-27 127.5 114 63.2
AUR62020076 Chenopodium quinoa HOM05D000642 ORTHO05D000483 2.1e-27 127.1 240 40.8
unitig_0.g316 Utricularia gibba HOM05D000642 ORTHO05D000483 2.7e-27 126.7 135 56.3
Ah.14g082660 Amaranthus hybridus HOM05D000642 ORTHO05D000483 1.8e-26 124.0 210 44.3
PSO384G2305 Papaver somniferum HOM05D000642 ORTHO05D000483 4.0e-26 122.9 178 45.5
PGR102G1863 Punica granatum HOM05D000642 ORTHO05D000483 8.8e-26 121.7 283 36.0
Hund18867 Selenicereus undatus HOM05D000642 ORTHO05D000483 2.0e-25 120.6 200 44.5
Glyma.14G009400 Glycine max HOM05D000642 ORTHO05D000483 2.8e-24 116.7 184 46.7
Sc21g0006150 Simmondsia chinensis HOM05D000642 ORTHO05D000483 3.7e-24 116.3 213 44.1
MBI14_g41425_MAGBIO Magnolia biondii HOM05D000642 ORTHO05D000483 4.1e-23 112.8 121 56.2
Glyma.02G304400 Glycine max HOM05D000642 ORTHO05D000483 5.9e-22 109.0 191 44.5
CDE02G1809 Ceratophyllum demersum HOM05D000642 ORTHO05D008166 7.7e-22 108.6 206 38.3
TPR.G30116 Trifolium pratense HOM05D000642 ORTHO05D000483 1.3e-21 107.8 197 42.1
ECA236G0717 Erigeron canadensis HOM05D000642 ORTHO05D000483 6.5e-21 105.5 203 36.9
MBI14_g32937_MAGBIO Magnolia biondii HOM05D000642 ORTHO05D000483 6.5e-21 105.5 165 47.9
EL10Ac7g16105 Beta vulgaris HOM05D000642 ORTHO05D000483 1.2e-19 101.3 124 50.0
FvH4_3g37820 Fragaria vesca HOM05D000642 ORTHO05D000483 1.2e-19 101.3 106 52.8
FAN11G3436 Fragaria x ananassa HOM05D000642 ORTHO05D000483 2.8e-19 100.1 106 51.9
RcHm_v2.0_Chr5g0068051 Rosa chinensis HOM05D000642 ORTHO05D000483 3.6e-19 99.8 125 53.6
Zm00001eb063110 Zea mays HOM05D000642 ORTHO05D000483 4.7e-19 99.4 198 35.9
FAN25G1708 Fragaria x ananassa HOM05D000642 ORTHO05D000483 1.6e-14 84.3 270 34.1
Sc12g0001000 Simmondsia chinensis HOM05D000642 ORTHO05D000483 2.3e-13 80.5 172 38.4
FAN16G1731 Fragaria x ananassa HOM05D000642 ORTHO05D000483 2.9e-13 80.1 271 33.2
SEGI_09110 Sequoiadendron giganteum HOM05D000642 ORTHO05D000483 1.1e-12 78.2 181 33.7
SMO358G0687 Selaginella moellendorffii HOM05D000642 ORTHO05D000483 7.5e-09 65.5 93 43.0
HPP92_024058 Vanilla planifolia HOM05D000642 ORTHO05D000483 7.5e-09 65.5 127 33.1
PSO384G0280 Papaver somniferum HOM05D000642 ORTHO05D000483 1.7e-08 64.3 95 36.8
CAN.G143.44 Capsicum annuum HOM05D000467 ORTHO05D000379 4.9e-08 62.8 61 49.2
Zm00001eb404850 Zea mays HOM05D000642 ORTHO05D000483 2.4e-07 60.5 58 44.8
PSO339G6155 Papaver somniferum HOM05D000642 ORTHO05D000483 4.1e-07 59.7 97 36.1
Nn6g33431 Nelumbo nucifera HOM05D000642 ORTHO05D000483 9.2e-07 58.5 70 52.9
ATR0681G385 Amborella trichopoda HOM05D000642 ORTHO05D000483 2.0e-06 57.4 136 29.4
HPP92_014440 Vanilla planifolia HOM05D000642 ORTHO05D000483 2.0e-06 57.4 77 37.7
Zm00001eb194990 Zea mays HOM05D000642 ORTHO05D000483 2.0e-06 57.4 58 41.4
Ah.02g117540 Amaranthus hybridus HOM05D000642 ORTHO05D000483 2.7e-06 57.0 56 44.6
AT4G36100 Arabidopsis thaliana HOM05D003695 ORTHO05D000483 2.7e-06 57.0 56 44.6
Eucgr.A00953 Eucalyptus grandis HOM05D000642 ORTHO05D000483 2.7e-06 57.0 56 44.6
Gohir.D08G156700 Gossypium hirsutum HOM05D000642 ORTHO05D000483 2.7e-06 57.0 121 28.1
MBI07_g00457_MAGBIO Magnolia biondii HOM05D000642 ORTHO05D000483 2.7e-06 57.0 78 42.3
Aqoxy4G02366 Aquilegia oxysepala HOM05D000642 ORTHO05D000483 3.5e-06 56.6 173 26.0
BcaC07g39225 Brassica carinata HOM05D000642 ORTHO05D000483 3.5e-06 56.6 56 44.6
ClCG05G002390 Citrullus lanatus HOM05D000642 ORTHO05D000483 3.5e-06 56.6 143 28.0
CsaV3_3G009830 Cucumis sativus L. HOM05D000642 ORTHO05D000483 3.5e-06 56.6 143 28.0
Prupe.6G042900 Prunus persica HOM05D000642 ORTHO05D000483 3.5e-06 56.6 178 28.7
unitig_8.g3330 Utricularia gibba HOM05D000642 ORTHO05D000483 3.5e-06 56.6 138 27.5
EL10Ac1g00865 Beta vulgaris HOM05D000642 ORTHO05D000483 4.6e-06 56.2 78 37.2
CARHR123730 Cardamine hirsuta HOM05D000642 ORTHO05D000483 4.6e-06 56.2 99 37.4
CiPaw.13G065200 Carya illinoinensis HOM05D000642 ORTHO05D000483 4.6e-06 56.2 194 30.9
Ciclev10003584m.g Citrus clementina HOM05D000642 ORTHO05D000483 4.6e-06 56.2 176 32.4
SGA_v2.0_scaffold43G16489 Striga asiatica HOM05D000642 ORTHO05D000483 4.6e-06 56.2 121 29.8
SGA_v2.0_scaffold4G01986 Striga asiatica HOM05D000642 ORTHO05D000483 4.6e-06 56.2 121 29.8
HPP92_000572 Vanilla planifolia HOM05D000642 ORTHO05D000483 4.6e-06 56.2 127 29.9
HPP92_017920 Vanilla planifolia HOM05D000642 ORTHO05D000483 4.6e-06 56.2 102 34.3
GSVIVG01027658001 Vitis vinifera HOM05D000642 ORTHO05D000483 4.6e-06 56.2 58 41.4
AT4G33320 Arabidopsis thaliana HOM05D000642 ORTHO05D000483 5.9e-06 55.8 56 44.6
C03p29980 Brassica napus HOM05D000642 ORTHO05D000483 5.9e-06 55.8 130 30.0
CANSAT54G2940 Cannabis sativa HOM05D000642 ORTHO05D000483 5.9e-06 55.8 172 32.0
TAR374G1241 Trochodendron aralioides HOM05D000642 ORTHO05D000483 5.9e-06 55.8 124 26.6
Zm00001eb120780 Zea mays HOM05D000642 ORTHO05D000483 5.9e-06 55.8 111 34.2
BraA03t11715Z Brassica rapa HOM05D000642 ORTHO05D000483 7.8e-06 55.5 101 33.7
Cc01_g15200 Coffea canephora HOM05D000642 ORTHO05D000483 7.8e-06 55.5 201 28.9
MELO3C006205.2 Cucumis melo HOM05D000642 ORTHO05D000483 7.8e-06 55.5 143 27.3
Gohir.A08G136000 Gossypium hirsutum HOM05D000642 ORTHO05D000483 7.8e-06 55.5 123 27.6
MD03G1053800 Malus domestica HOM05D000642 ORTHO05D000483 7.8e-06 55.5 176 29.5
TWI59G1179 Tripterygium wilfordii HOM05D000642 ORTHO05D000483 7.8e-06 55.5 55 45.5
HPP92_014437 Vanilla planifolia HOM05D000642 ORTHO05D000483 7.8e-06 55.5 123 27.6


User provided reference genes

Program Settings