Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 8.9e-287 989.6 499 100.0
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 7.3e-188 661.0 432 74.8
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 1.2e-171 607.1 428 68.9
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.6e-166 590.1 427 68.9
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.0e-165 587.4 427 69.1
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.6e-163 580.1 427 68.4
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 5.3e-162 575.1 423 67.1
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 5.8e-161 571.6 445 64.0
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 9.9e-161 570.9 433 65.6
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 1.7e-160 570.1 434 65.4
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 6.4e-160 568.2 428 65.9
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 1.1e-159 567.4 435 64.4
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 1.3e-157 560.5 443 64.1
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 3.9e-157 558.9 430 65.8
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 9.6e-156 554.3 432 64.4
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 1.4e-154 550.4 435 63.4
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 3.4e-153 545.8 441 61.9
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 3.8e-152 542.3 429 61.8
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 4.9e-152 542.0 446 60.8
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 2.4e-151 539.7 424 62.5
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 6.7e-149 531.6 461 60.7
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 5.6e-148 528.5 415 63.1
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 3.1e-146 522.7 454 60.4
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 1.2e-145 520.8 439 59.5
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 2.0e-145 520.0 439 59.2
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 2.6e-145 519.6 420 61.9
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 4.9e-144 515.4 413 61.5
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 2.5e-143 513.1 432 61.6
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.6e-142 510.4 451 57.9
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 2.1e-142 510.0 487 55.0
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 2.1e-142 510.0 422 60.9
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 2.7e-142 509.6 420 61.0
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 1.3e-141 507.3 431 57.5
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 1.1e-140 504.2 428 58.9
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 1.9e-140 503.4 436 58.9
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 5.7e-140 501.9 435 59.8
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 7.4e-140 501.5 430 59.3
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 1.3e-139 500.7 425 57.9
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.6e-139 500.4 432 58.8
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 1.6e-139 500.4 431 58.0
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.1e-139 500.0 421 60.8
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 2.8e-139 499.6 432 58.3
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 2.8e-139 499.6 432 58.3
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 2.8e-139 499.6 432 59.7
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 4.8e-139 498.8 435 59.3
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 8.2e-139 498.0 430 61.6
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 1.8e-138 496.9 435 58.9
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 5.8e-137 491.9 437 57.9
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 1.7e-136 490.3 429 56.9
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 1.7e-136 490.3 432 58.8
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 3.8e-136 489.2 432 58.1
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 5.0e-136 488.8 426 56.6
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 8.4e-136 488.0 424 59.0
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.9e-135 486.9 432 57.4
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 4.2e-135 485.7 429 55.5
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 7.1e-135 485.0 425 57.4
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 1.6e-134 483.8 489 55.4
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 2.7e-134 483.0 419 58.0
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 7.9e-134 481.5 431 56.1
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 2.3e-133 479.9 432 54.9
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 1.9e-132 476.9 448 56.9
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 1.9e-132 476.9 428 56.5
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 5.7e-132 475.3 447 56.8
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 7.4e-132 474.9 432 54.2
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 3.1e-130 469.5 294 76.5
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 9.0e-130 468.0 445 56.0
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 1.2e-129 467.6 307 73.6
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 1.5e-129 467.2 414 57.2
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 2.6e-129 466.5 428 56.1
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 7.7e-129 464.9 430 54.7
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 1.0e-128 464.5 428 57.0
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 6.5e-128 461.8 434 53.2
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 8.5e-128 461.5 368 60.9
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 2.5e-127 459.9 431 54.1
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 4.2e-127 459.1 428 56.5
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 2.1e-126 456.8 432 52.5
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 2.7e-126 456.4 421 55.6
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 6.1e-126 455.3 414 56.5
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 3.9e-125 452.6 421 53.0
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 1.5e-124 450.7 428 53.0
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 5.7e-124 448.7 433 55.0
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 1.3e-123 447.6 380 60.3
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 6.3e-123 445.3 421 52.5
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 1.8e-122 443.7 421 52.0
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 1.2e-121 441.0 433 51.3
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 2.6e-121 439.9 432 53.9
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 3.4e-121 439.5 441 50.3
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 4.5e-121 439.1 423 54.1
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 7.7e-121 438.3 427 53.6
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 3.2e-119 433.0 433 52.4
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 2.1e-118 430.3 422 55.7
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 7.9e-118 428.3 441 53.5
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 3.3e-116 422.9 432 53.7
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 9.7e-116 421.4 440 52.7
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 4.5e-113 412.5 426 51.2
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 7.0e-106 388.7 352 56.2
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.9e-103 380.6 359 56.0
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 8.0e-102 375.2 423 47.0
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 3.5e-97 359.8 445 45.6
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.8e-90 337.4 325 55.1
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 5.4e-90 335.9 433 43.9
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 4.6e-65 253.1 278 48.6
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 2.3e-61 240.7 393 40.7
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 8.4e-59 232.3 163 69.3
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 4.1e-58 229.9 258 47.3
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 9.2e-58 228.8 388 36.6
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 8.1e-54 215.7 233 53.2
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 3.4e-52 210.3 371 34.5
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 9.9e-52 208.8 237 46.0
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.2e-51 207.6 144 68.1
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 2.2e-51 207.6 140 70.0
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 1.1e-50 205.3 275 40.4
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 4.2e-50 203.4 319 37.3
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 5.8e-44 183.0 140 60.7
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 3.6e-38 163.7 140 59.3
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.5e-36 158.3 159 53.5
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 6.4e-35 152.9 159 47.8
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 2.1e-33 147.9 311 32.2
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 2.9e-19 100.9 279 23.3
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 1.9e-15 88.2 61 65.6
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 2.5e-15 87.8 61 67.2
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 4.8e-14 83.6 106 41.5
Cre01.g048600 Chlamydomonas reinhardtii HOM05D006228 ORTHO05D007847 6.3e-14 83.2 186 25.3
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 7.9e-09 66.2 182 29.7
Nitab4.5_0001379g0140 Nicotiana tabacum HOM05D006228 ORTHO05D007847 1.7e-06 58.5 29 86.2


User provided reference genes

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