Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13580 Nelumbo nucifera HOM05D006079 ORTHO05D008156 6.0e-252 873.6 419 100.0
Manes.08G086700 Manihot esculenta HOM05D006079 ORTHO05D008156 5.9e-199 697.6 426 78.4
Dinv35521 Davidia involucrata HOM05D006079 ORTHO05D008156 2.3e-195 685.6 430 76.7
Gorai.012G110900 Gossypium raimondii HOM05D006079 ORTHO05D008156 1.5e-194 682.9 426 75.6
Gohir.A04G087500 Gossypium hirsutum HOM05D006079 ORTHO05D008156 3.3e-194 681.8 425 76.2
CSS0045639 Camellia sinensis var. sinensis HOM05D006079 ORTHO05D008156 2.8e-193 678.7 429 76.7
Duzib093G0682 Durio zibethinus HOM05D006079 ORTHO05D008156 6.3e-193 677.6 423 75.9
CiPaw.10G153700 Carya illinoinensis HOM05D006079 ORTHO05D008156 2.4e-192 675.6 428 75.0
Cfa017268 Carpinus fangiana HOM05D006079 ORTHO05D008156 2.0e-191 672.5 429 74.6
Atru.chr8.2129 Acer truncatum HOM05D006079 ORTHO05D008156 3.5e-191 671.8 431 75.2
Prupe.6G269000 Prunus persica HOM05D006079 ORTHO05D008156 7.7e-191 670.6 427 76.3
Haze_20934 Corylus avellana HOM05D006079 ORTHO05D008156 3.8e-190 668.3 433 73.9
PSO585G0039 Papaver somniferum HOM05D006079 ORTHO05D008156 8.5e-190 667.2 422 74.4
Thecc.05G024000 Theobroma cacao HOM05D006079 ORTHO05D008156 2.5e-189 665.6 425 75.5
GSVIVG01034026001 Vitis vinifera HOM05D006079 ORTHO05D008156 4.2e-189 664.8 427 74.9
Gohir.D04G127900 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.6e-188 662.9 426 74.4
QL07p036333 Quercus lobata HOM05D006079 ORTHO05D008156 4.7e-188 661.4 432 74.3
TWI77G0608 Tripterygium wilfordii HOM05D006079 ORTHO05D008156 1.8e-187 659.4 425 74.8
COL.COLO4_14632 Corchorus olitorius HOM05D006079 ORTHO05D008156 3.0e-187 658.7 425 74.6
PSO384G3626 Papaver somniferum HOM05D006079 ORTHO05D008156 1.2e-186 656.8 422 73.9
CANSAT35G1087 Cannabis sativa HOM05D006079 ORTHO05D008156 5.7e-186 654.4 427 74.0
Actinidia13795 Actinidia chinensis HOM05D006079 ORTHO05D008156 1.7e-185 652.9 429 73.4
FAN14G2872 Fragaria x ananassa HOM05D006079 ORTHO05D008156 6.3e-185 651.0 427 73.3
FvH4_6g12250 Fragaria vesca HOM05D006079 ORTHO05D008156 8.3e-185 650.6 427 73.1
Duzib128G0993 Durio zibethinus HOM05D006079 ORTHO05D008156 1.1e-184 650.2 425 72.9
MD12G1158600 Malus domestica HOM05D006079 ORTHO05D008156 1.1e-184 650.2 428 73.6
Glyma.07G143100 Glycine max HOM05D006079 ORTHO05D008156 1.4e-184 649.8 428 73.8
FAN02G2404 Fragaria x ananassa HOM05D006079 ORTHO05D008156 2.4e-184 649.0 427 72.4
Cpa.g.sc56.97 Carica papaya HOM05D006079 ORTHO05D008156 2.0e-183 646.0 412 74.3
FAN05G0163 Fragaria x ananassa HOM05D006079 ORTHO05D008156 5.9e-183 644.4 427 71.9
FAN09G0680 Fragaria x ananassa HOM05D006079 ORTHO05D008156 1.3e-182 643.3 427 72.6
Psat3g135200 Pisum sativum HOM05D006079 ORTHO05D008156 1.5e-181 639.8 430 71.6
PGR031G3170 Punica granatum HOM05D006079 ORTHO05D008156 3.2e-181 638.6 433 71.6
Sabra06G0073200 Salix brachista HOM05D006079 ORTHO05D008156 3.2e-181 638.6 427 72.6
RcHm_v2.0_Chr3g0464051 Rosa chinensis HOM05D006079 ORTHO05D008156 5.5e-181 637.9 428 71.7
TAR633G1690 Trochodendron aralioides HOM05D006079 ORTHO05D008156 5.5e-181 637.9 434 72.8
Eucgr.B02761 Eucalyptus grandis HOM05D006079 ORTHO05D008156 2.1e-180 636.0 427 72.1
Potri.006G095400 Populus trichocarpa HOM05D006079 ORTHO05D008156 8.0e-180 634.0 427 73.1
Nitab4.5_0007539g0010 Nicotiana tabacum HOM05D006079 ORTHO05D008156 8.8e-179 630.6 434 70.3
Lalb_Chr01g0022871 Lupinus albus HOM05D006079 ORTHO05D008156 2.0e-178 629.4 425 72.7
MSTRG.5605 Avicennia marina HOM05D006079 ORTHO05D008156 1.3e-177 626.7 424 71.0
Nitab4.5_0000008g0510 Nicotiana tabacum HOM05D006079 ORTHO05D008156 1.3e-177 626.7 430 69.5
Ciclev10011790m.g Citrus clementina HOM05D006079 ORTHO05D008156 4.9e-177 624.8 430 71.4
MELO3C003219.2 Cucumis melo HOM05D006079 ORTHO05D008156 8.3e-177 624.0 427 70.7
Ca_09158_v3 Cicer arietinum L. HOM05D006079 ORTHO05D008156 1.1e-176 623.6 426 70.7
Lj1g0026135 Lotus japonicus HOM05D006079 ORTHO05D008156 1.1e-176 623.6 431 70.8
Peaxi162Scf01352g00015 Petunia axillaris HOM05D006079 ORTHO05D008156 1.8e-176 622.9 420 70.2
Medtr7g066250 Medicago truncatula HOM05D006079 ORTHO05D008156 2.4e-176 622.5 429 70.6
CsaV3_4G025930 Cucumis sativus L. HOM05D006079 ORTHO05D008156 5.4e-176 621.3 427 70.7
PGSC0003DMG400020333 Solanum tuberosum HOM05D006079 ORTHO05D008156 9.2e-176 620.5 434 69.4
Lj2A83T75 Lonicera japonica HOM05D006079 ORTHO05D008156 1.6e-175 619.8 404 74.5
Solyc09g011880.3 Solanum lycopersicum HOM05D006079 ORTHO05D008156 2.7e-175 619.0 433 69.7
Sopen09g006700 Solanum pennellii HOM05D006079 ORTHO05D008156 3.5e-175 618.6 433 69.5
ClCG04G007320 Citrullus lanatus HOM05D006079 ORTHO05D008156 7.8e-175 617.5 427 70.0
arahy.Tifrunner.gnm1.ann1.3KU04F Arachis hypogaea HOM05D006079 ORTHO05D008156 1.0e-174 617.1 424 71.0
Aqoxy1G00752 Aquilegia oxysepala HOM05D006079 ORTHO05D008156 2.9e-174 615.5 426 71.1
Phvul.008G111400 Phaseolus vulgaris HOM05D006079 ORTHO05D008156 5.0e-174 614.8 428 70.6
Sed0002088 Sechium edule HOM05D006079 ORTHO05D008156 6.6e-174 614.4 422 69.4
Sc25g0003370 Simmondsia chinensis HOM05D006079 ORTHO05D008156 5.6e-173 611.3 428 69.4
Migut.J00236 Erythranthe guttata HOM05D006079 ORTHO05D008156 1.6e-172 609.8 426 70.0
ECA236G0495 Erigeron canadensis HOM05D006079 ORTHO05D008156 8.9e-171 604.0 448 66.1
Cc06_g01790 Coffea canephora HOM05D006079 ORTHO05D008156 1.7e-169 599.7 439 68.6
arahy.Tifrunner.gnm1.ann1.GZPT0A Arachis hypogaea HOM05D006079 ORTHO05D008156 3.7e-169 598.6 448 66.3
SGA_v2.0_scaffold85G26780 Striga asiatica HOM05D006079 ORTHO05D008156 7.0e-168 594.3 426 67.1
HanXRQChr04g0124711 Helianthus annuus HOM05D006079 ORTHO05D008156 3.9e-166 588.6 428 67.1
CARHR132560 Cardamine hirsuta HOM05D006079 ORTHO05D008156 3.3e-165 585.5 422 65.6
BcaB02g09226 Brassica carinata HOM05D006079 ORTHO05D008156 2.1e-164 582.8 420 64.3
BcaC02g11943 Brassica carinata HOM05D006079 ORTHO05D008156 2.1e-164 582.8 420 64.3
THA.LOC104823390 Tarenaya hassleriana HOM05D006079 ORTHO05D008156 2.8e-164 582.4 420 66.0
Thhalv10016725m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 2.6e-162 575.9 420 64.3
A05p08000 Brassica napus HOM05D006079 ORTHO05D008156 1.7e-161 573.2 421 64.1
Oeu015011.1 Olea europaea HOM05D006079 ORTHO05D008156 2.4e-160 569.3 405 69.4
AL4G34980 Arabidopsis lyrata HOM05D006079 ORTHO05D008156 5.4e-160 568.2 421 63.4
BolC4t22573H Brassica oleracea HOM05D006079 ORTHO05D008156 5.4e-160 568.2 414 63.8
Aa31LG5G23170 Aethionema arabicum HOM05D006079 ORTHO05D008156 7.0e-160 567.8 420 64.3
AT2G38000 Arabidopsis thaliana HOM05D006079 ORTHO05D008156 1.2e-159 567.0 422 63.7
Sp4g20320 Schrenkiella parvula HOM05D006079 ORTHO05D008156 2.3e-158 562.8 419 62.1
BraA05t19766Z Brassica rapa HOM05D006079 ORTHO05D008156 3.0e-158 562.4 417 63.3
BcaB02g09227 Brassica carinata HOM05D006079 ORTHO05D008156 6.6e-158 561.2 420 62.9
Rhsim05G0203500 Rhododendron simsii HOM05D006079 ORTHO05D008156 6.6e-158 561.2 351 74.9
Actinidia29142 Actinidia chinensis HOM05D006079 ORTHO05D008156 9.5e-157 557.4 421 66.5
Ah.11g045330 Amaranthus hybridus HOM05D006079 ORTHO05D008156 1.2e-156 557.0 427 63.9
MBI05_g36624_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 3.6e-156 555.4 329 79.0
Carub.0004s1997 Capsella rubella HOM05D006079 ORTHO05D008156 8.1e-156 554.3 421 62.2
vmacro20226 Vaccinium macrocarpon HOM05D006079 ORTHO05D008156 1.8e-155 553.1 432 64.6
DCAR_024040 Daucus carota HOM05D006079 ORTHO05D008156 3.1e-155 552.4 454 61.9
AUR62041356 Chenopodium quinoa HOM05D006079 ORTHO05D008156 1.2e-151 540.4 391 65.5
VMungo1383G1007 Vigna mungo HOM05D006079 ORTHO05D008156 1.0e-150 537.3 383 70.8
HPP92_006654 Vanilla planifolia HOM05D006079 ORTHO05D008156 2.3e-150 536.2 428 61.7
ATR0618G129 Amborella trichopoda HOM05D006079 ORTHO05D008156 1.4e-147 526.9 410 62.9
C04p09660 Brassica napus HOM05D006079 ORTHO05D008156 5.2e-147 525.0 398 62.8
Lsat_1_v5_gn_8_82341 Lactuca sativa HOM05D006079 ORTHO05D008156 2.0e-146 523.1 409 66.0
unitig_26.g9105 Utricularia gibba HOM05D006079 ORTHO05D008156 3.4e-146 522.3 414 63.0
Hma1.2p1_0763F.1_g214490 Hydrangea macrophylla HOM05D006079 ORTHO05D008156 5.8e-146 521.5 428 63.1
EL10Ac5g11535 Beta vulgaris HOM05D006079 ORTHO05D008156 4.1e-144 515.4 419 60.6
CDE04G0224 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 7.8e-143 511.1 410 62.0
Gohir.A13G086740 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.1e-139 500.7 423 59.3
Os05g0316200 Oryza sativa ssp. japonica HOM05D006079 ORTHO05D008156 9.0e-139 497.7 407 60.0
Zm00001eb169630 Zea mays HOM05D006079 ORTHO05D008156 2.0e-138 496.5 403 59.3
SEGI_08405 Sequoiadendron giganteum HOM05D006079 ORTHO05D008156 3.6e-132 475.7 326 70.2
CDE07G0746 Ceratophyllum demersum HOM05D006079 ORTHO05D008156 5.1e-118 428.7 421 55.8
TPR.G29287 Trifolium pratense HOM05D006079 ORTHO05D008156 8.2e-116 421.4 263 74.9
CAN.G338.65 Capsicum annuum HOM05D006079 ORTHO05D008156 2.8e-108 396.4 305 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3694 Anthoceros agrestis HOM05D006079 ORTHO05D008156 7.2e-104 381.7 400 49.0
Migut.J00237 Erythranthe guttata HOM05D006079 ORTHO05D008156 2.4e-99 366.7 398 50.0
BcaC02g11941 Brassica carinata HOM05D006079 ORTHO05D008156 2.2e-97 360.1 221 73.3
Mapoly0040s0094 Marchantia polymorpha HOM05D006079 ORTHO05D008156 1.1e-88 331.3 415 42.2
HPP92_006629 Vanilla planifolia HOM05D006079 ORTHO05D008156 4.2e-88 329.3 304 55.3
SMO172G0100 Selaginella moellendorffii HOM05D006079 ORTHO05D008156 4.8e-84 315.8 320 50.3
Pp3c16_16710 Physcomitrium patens HOM05D006079 ORTHO05D008156 2.9e-81 306.6 390 42.3
Gohir.D13G085200 Gossypium hirsutum HOM05D006079 ORTHO05D008156 2.5e-72 276.9 195 66.2
Gohir.A01G178136 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.1e-56 224.9 166 64.5
CAN.G686.13 Capsicum annuum HOM05D006079 ORTHO05D008156 2.8e-55 220.3 130 77.7
Lsat_1_v5_gn_5_162881 Lactuca sativa HOM05D006079 ORTHO05D008156 3.6e-55 219.9 135 74.1
MD04G1144700 Malus domestica HOM05D006079 ORTHO05D008156 3.0e-54 216.9 155 69.7
Thhalv10017300m.g Eutrema salsugineum HOM05D006079 ORTHO05D008156 1.5e-53 214.5 223 49.3
Gorai.006G157700 Gossypium raimondii HOM05D006079 ORTHO05D008156 7.3e-40 169.1 133 62.4
Gohir.D09G137350 Gossypium hirsutum HOM05D006079 ORTHO05D008156 1.8e-38 164.5 133 60.9
QL07p036284 Quercus lobata HOM05D006079 ORTHO05D338014 3.5e-34 150.2 104 68.3
Cc02_g12960 Coffea canephora HOM05D006079 ORTHO05D008156 1.3e-33 148.3 134 58.2
TAR636G2503 Trochodendron aralioides HOM05D006079 ORTHO05D008156 2.3e-33 147.5 82 86.6
MD04G1144600 Malus domestica HOM05D006079 ORTHO05D032748 8.4e-28 129.0 92 65.2
TPR.G34865 Trifolium pratense HOM05D006079 ORTHO05D008156 2.5e-24 117.5 119 52.9
MBI05_g36625_MAGBIO Magnolia biondii HOM05D006079 ORTHO05D008156 8.4e-20 102.4 91 62.6
BraA05t21464Z Brassica rapa HOM05D006079 ORTHO05D032748 1.3e-12 78.6 53 62.3
BcaC04g24204 Brassica carinata HOM05D006079 ORTHO05D032748 1.3e-09 68.6 53 56.6
QL05p054729 Quercus lobata HOM05D006079 ORTHO05D338210 6.9e-06 56.2 60 58.3


User provided reference genes

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