Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 0.0e+00 2766.5 1727 100.0
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 0.0e+00 1484.5 1758 62.9
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 0.0e+00 1122.5 1845 54.3
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 7.0e-254 882.1 1806 48.3
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 4.1e-214 750.0 1779 43.2
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 4.1e-214 750.0 1779 43.2
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 4.1e-214 750.0 1779 43.2
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 2.8e-210 737.3 1865 45.0
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 6.4e-199 699.5 1775 41.4
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 1.7e-196 691.4 1762 41.5
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 4.3e-195 686.8 1806 42.6
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 9.3e-190 669.1 1766 40.6
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 8.7e-188 662.5 1765 39.7
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 6.0e-181 639.8 1762 38.9
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 4.0e-177 627.1 1766 38.9
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 8.1e-170 602.8 1753 36.1
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 1.5e-168 598.6 1765 43.2
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 8.4e-167 592.8 1358 42.3
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.4e-158 565.5 1712 35.9
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.0e-148 532.7 1730 36.3
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 3.1e-145 521.2 1313 42.7
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 5.3e-145 520.4 1760 38.5
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 2.6e-144 518.1 1789 38.5
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.0e-143 516.2 1740 35.4
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 1.4e-142 512.3 1745 35.9
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.6e-141 508.8 1758 36.3
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 2.7e-141 508.1 1783 37.8
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 3.6e-141 507.7 1839 37.1
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 2.6e-139 501.5 1817 36.2
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.1e-137 496.1 1762 34.8
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 1.4e-137 495.7 1751 35.2
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 4.5e-136 490.7 1756 37.1
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 3.8e-135 487.6 1778 37.6
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 5.5e-134 483.8 1763 35.3
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.3e-131 474.6 1755 34.0
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.4e-131 474.2 1753 35.0
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 6.3e-130 470.3 1810 36.2
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 9.1e-129 466.5 1740 35.4
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.3e-127 462.6 1764 33.3
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.1e-125 455.3 1781 34.1
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 3.0e-124 451.4 1739 33.9
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 5.2e-124 450.7 1757 35.3
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.4e-123 447.6 1756 34.1
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 7.5e-123 446.8 1310 35.2
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.4e-121 442.6 1762 32.7
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.6e-120 439.1 1798 32.0
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.7e-119 435.6 1758 33.3
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.7e-114 417.9 1746 35.6
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 8.6e-111 406.8 1738 32.9
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 2.1e-109 402.1 1757 31.5
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 2.8e-109 401.7 1756 32.1
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 4.7e-109 401.0 1779 34.2
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 4.9e-106 391.0 1771 34.0
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 3.2e-105 388.3 1770 33.1
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.2e-104 386.3 1733 32.5
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.2e-104 386.3 497 62.2
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.0e-104 385.6 1719 33.7
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 3.6e-101 374.8 1752 34.6
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.4e-100 372.9 1738 31.8
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.8e-100 372.5 1186 33.6
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.0e-95 356.7 1801 34.0
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.3e-95 356.3 1234 34.8
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.3e-95 356.3 733 40.0
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 5.0e-95 354.4 1753 31.9
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.1e-94 353.2 1549 28.9
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.5e-94 352.8 229 79.0
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 4.3e-94 351.3 1763 32.0
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 5.6e-94 350.9 1785 35.0
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 7.3e-94 350.5 1773 34.6
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 1.8e-92 345.9 1802 32.9
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 4.9e-90 337.8 1750 33.9
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 6.4e-90 337.4 223 76.2
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 8.3e-90 337.0 1296 33.3
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 1.6e-88 332.8 1756 36.6
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 3.1e-84 318.5 1742 34.9
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 8.9e-84 317.0 1749 35.2
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 6.4e-82 310.8 694 54.6
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 3.3e-78 298.5 1767 31.7
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 1.2e-77 296.6 232 67.2
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 4.0e-76 291.6 226 66.4
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 6.8e-76 290.8 229 65.9
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 9.9e-75 287.0 172 77.9
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.0e-71 276.9 1251 32.0
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 5.1e-71 274.6 1856 32.5
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 6.6e-71 274.2 227 63.9
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 5.6e-70 271.2 176 72.2
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 2.1e-69 269.2 239 59.8
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 5.3e-68 264.6 224 62.1
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 9.9e-67 260.4 222 61.7
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 7.1e-65 254.2 1768 34.9
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 1.0e-63 250.4 140 79.3
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 1.3e-63 250.0 1320 29.5
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.3e-63 249.2 770 34.4
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.9e-62 246.1 1250 32.3
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 4.0e-60 238.4 736 33.0
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.2e-59 236.9 1287 28.9
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 3.4e-59 235.3 223 53.4
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 6.7e-55 221.1 1301 30.6
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 7.6e-51 207.6 501 37.9
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 1.0e-50 207.2 787 40.2
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 2.9e-50 205.7 147 61.9
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 9.3e-49 200.7 723 32.6
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 3.9e-47 195.3 103 79.6
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.1e-46 193.7 189 51.9
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.5e-46 193.4 101 86.1
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 6.3e-45 188.0 173 59.0
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 2.9e-42 179.1 179 56.4
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 9.3e-41 174.1 584 30.1
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.1e-38 167.2 181 47.5
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 1.1e-38 167.2 356 37.1
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 6.3e-37 161.4 683 29.3
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 9.0e-36 157.5 163 49.1
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 1.2e-35 157.1 145 52.4
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.2e-35 157.1 225 44.0
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.0e-31 144.1 77 81.8
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.0e-31 144.1 77 81.8
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 3.1e-28 132.5 106 63.2
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 9.1e-28 131.0 111 61.3
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 3.4e-27 129.0 671 29.2
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 6.3e-21 108.2 342 30.7
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.3e-20 105.1 94 58.5
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 6.1e-16 91.7 858 27.4
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 3.0e-15 89.4 131 33.6
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 2.6e-14 86.3 140 27.1
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 7.5e-14 84.7 115 33.0
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 9.7e-14 84.3 114 35.1
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 3.7e-13 82.4 212 25.9
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 3.7e-13 82.4 114 33.3
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 3.7e-13 82.4 225 34.7
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 1.1e-12 80.9 430 24.7
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 1.6e-11 77.0 161 34.8
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 2.0e-11 76.6 56 60.7
CDE09G1325 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 4.7e-08 65.5 125 36.8
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 6.1e-08 65.1 205 31.2
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 3.0e-07 62.8 91 42.9
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 4.0e-07 62.4 43 62.8
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 3.4e-06 59.3 177 32.8


User provided reference genes

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