Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13564 Nelumbo nucifera HOM05D015489 ORTHO05D013616 3.8e-73 278.1 141 100.0
Nn1g01561 Nelumbo nucifera HOM05D015489 ORTHO05D013616 1.6e-23 113.2 115 47.8
Nn4g25716 Nelumbo nucifera HOM05D015489 ORTHO05D013616 5.2e-14 81.6 109 43.1
Nn1g05356 Nelumbo nucifera HOM05D016503 ORTHO05D013616 2.8e-12 75.9 94 44.7
Nn2g11252 Nelumbo nucifera HOM05D015489 ORTHO05D013616 3.7e-12 75.5 76 48.7
Nn5g30894 Nelumbo nucifera HOM05D030777 ORTHO05D000167 2.4e-11 72.8 103 34.0
Nn3g19367 Nelumbo nucifera HOM05D000001 ORTHO05D012439 4.1e-11 72.0 107 39.3
Nn5g28303 Nelumbo nucifera HOM05D016503 ORTHO05D013616 4.1e-11 72.0 109 35.8
EL10Ac9g22665 Beta vulgaris HOM05D000003 ORTHO05D000167 7.7e-10 67.8 144 30.6
Nn1g05778 Nelumbo nucifera HOM05D030777 ORTHO05D013616 1.0e-09 67.4 99 38.4
FvH4_5g08801 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-09 67.0 145 29.0
Nn4g24002 Nelumbo nucifera HOM05D016503 ORTHO05D013616 1.3e-09 67.0 104 34.6
Nn1g03527 Nelumbo nucifera HOM05D015489 ORTHO05D013616 1.7e-09 66.6 89 37.1
Nn1g00184 Nelumbo nucifera HOM05D016503 ORTHO05D013616 3.8e-09 65.5 90 37.8
Nn3g18091 Nelumbo nucifera HOM05D030777 ORTHO05D000167 3.8e-09 65.5 105 34.3
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 5.0e-09 65.1 124 34.7
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 6.5e-09 64.7 124 33.9
COL.COLO4_16656 Corchorus olitorius HOM05D013144 ORTHO05D009449 1.1e-08 63.9 113 35.4
Nn4g22746 Nelumbo nucifera HOM05D015489 ORTHO05D000167 1.1e-08 63.9 90 37.8
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 1.9e-08 63.2 108 36.1
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 3.2e-08 62.4 120 33.3
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 5.5e-08 61.6 128 34.4
Nn5g29059 Nelumbo nucifera HOM05D015489 ORTHO05D013616 1.6e-07 60.1 116 31.0
PSO761G0259 Papaver somniferum HOM05D008740 ORTHO05D006738 3.6e-07 58.9 120 33.3
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 3.6e-07 58.9 117 35.0
VMungo0647G1401 Vigna mungo HOM05D000155 ORTHO05D000022 3.6e-07 58.9 117 30.8
CANSAT25G0112 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-07 58.5 120 35.0
vmacro01570 Vaccinium macrocarpon HOM05D006337 ORTHO05D008050 4.7e-07 58.5 102 35.3
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 6.1e-07 58.2 125 29.6
FvH4_2g34753 Fragaria vesca HOM05D000003 ORTHO05D014221 6.1e-07 58.2 109 33.9
Nn6g31622 Nelumbo nucifera HOM05D015489 ORTHO05D013616 8.0e-07 57.8 105 33.3
FAN12G0535 Fragaria x ananassa HOM05D008833 ORTHO05D000167 1.0e-06 57.4 107 32.7
RcHm_v2.0_Chr4g0404581 Rosa chinensis HOM05D000003 ORTHO05D000022 1.0e-06 57.4 115 34.8
VMungo0647G2109 Vigna mungo HOM05D000155 ORTHO05D000022 1.0e-06 57.4 117 31.6
Atru.chr11.1731 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-06 57.0 88 35.2
RcHm_v2.0_Chr0c22g0500391 Rosa chinensis HOM05D008833 ORTHO05D000167 1.4e-06 57.0 87 36.8
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 1.4e-06 57.0 87 36.8
vmacro21511 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 1.4e-06 57.0 116 32.8
Atru.chr4.2041 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-06 56.6 90 36.7
PSO339G3265 Papaver somniferum HOM05D008740 ORTHO05D006738 1.8e-06 56.6 93 33.3
Atru.chr8.67 Acer truncatum HOM05D000003 ORTHO05D000167 2.3e-06 56.2 88 35.2
Hund07702 Selenicereus undatus HOM05D001688 ORTHO05D001571 2.3e-06 56.2 112 33.9
Sed0025910 Sechium edule HOM05D000003 ORTHO05D000167 3.0e-06 55.8 109 35.8
TWI09G0223 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.0e-06 55.8 110 38.2
Atru.chr11.265 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-06 55.5 111 35.1
FAN10G0622 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.0e-06 55.5 87 36.8
PSO357G0702 Papaver somniferum HOM05D008740 ORTHO05D006738 4.0e-06 55.5 103 32.0
Sc05g0008160 Simmondsia chinensis HOM05D000155 ORTHO05D000022 4.0e-06 55.5 96 33.3
Atru.chr1.3957 Acer truncatum HOM05D000003 ORTHO05D000167 5.2e-06 55.1 93 37.6
Aqoxy4G02038 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 5.2e-06 55.1 107 34.6
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.2e-06 55.1 126 30.2
Lj6g0015390 Lotus japonicus HOM05D000003 ORTHO05D000004 5.2e-06 55.1 119 29.4
arahy.Tifrunner.gnm1.ann1.CIE5KM Arachis hypogaea HOM05D000003 ORTHO05D000022 6.7e-06 54.7 92 35.9
Nn1g05512 Nelumbo nucifera HOM05D015489 ORTHO05D013616 6.7e-06 54.7 89 33.7
Prupe.1G073500 Prunus persica HOM05D008133 ORTHO05D007254 6.7e-06 54.7 107 34.6
QL05p080949 Quercus lobata HOM05D000155 ORTHO05D000022 6.7e-06 54.7 117 29.1
Aqoxy5G00081 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 8.8e-06 54.3 132 28.8
EL10Ac6g13992 Beta vulgaris HOM05D000003 ORTHO05D000004 8.8e-06 54.3 92 38.0
vmacro06901 Vaccinium macrocarpon HOM05D004933 ORTHO05D005465 8.8e-06 54.3 107 33.6


User provided reference genes

Program Settings