Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 8.1e-199 697.2 442 100.0
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.2e-154 550.4 445 72.8
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 4.2e-139 498.8 448 67.4
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 4.0e-137 492.3 444 66.2
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.1e-134 482.6 451 65.2
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 9.1e-134 481.1 451 65.6
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 1.0e-132 477.6 451 63.9
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 5.0e-132 475.3 451 64.7
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 5.0e-132 475.3 451 64.7
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 5.0e-132 475.3 445 65.6
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.9e-131 473.4 450 66.0
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.5e-131 471.1 445 63.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.2e-130 470.7 445 63.1
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.6e-130 469.2 445 63.1
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 3.6e-130 469.2 467 62.3
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 6.1e-130 468.4 445 62.7
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 8.0e-130 468.0 448 63.8
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 3.0e-129 466.1 449 61.9
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 8.9e-129 464.5 447 65.1
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.5e-128 463.8 450 73.3
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-128 463.8 445 62.2
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 2.6e-128 463.0 448 62.7
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 2.6e-128 463.0 444 64.6
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 2.6e-128 463.0 444 64.2
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 2.6e-128 463.0 446 62.3
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.3e-127 460.7 445 63.8
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 1.3e-127 460.7 446 63.0
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.7e-127 460.3 450 64.4
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 2.8e-127 459.5 445 62.9
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 8.3e-127 458.0 445 63.6
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 3.5e-125 452.6 436 65.1
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 4.5e-125 452.2 446 61.7
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 7.8e-125 451.4 449 62.8
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 7.8e-125 451.4 415 64.6
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 1.0e-124 451.1 452 61.1
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.9e-124 449.1 450 60.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 5.0e-124 448.7 442 60.9
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.1e-123 447.6 447 62.4
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 1.5e-123 447.2 448 62.9
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.5e-123 447.2 448 61.2
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 2.5e-123 446.4 452 61.5
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 3.3e-123 446.0 438 63.0
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 2.1e-122 443.4 448 60.7
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 8.0e-122 441.4 448 60.7
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.4e-121 440.7 445 60.9
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 1.8e-121 440.3 446 60.5
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 4.0e-121 439.1 443 60.0
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 6.8e-121 438.3 447 59.3
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 6.8e-121 438.3 447 59.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 8.9e-121 438.0 451 60.8
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 8.9e-121 438.0 450 61.6
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 1.2e-120 437.6 455 60.4
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.5e-120 437.2 448 67.6
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 3.4e-120 436.0 448 59.4
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 4.4e-120 435.6 446 58.3
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 4.4e-120 435.6 427 63.5
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.7e-119 433.7 443 60.0
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 2.4e-118 429.9 458 58.7
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 4.1e-118 429.1 443 58.5
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 5.4e-118 428.7 449 59.5
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 7.0e-118 428.3 445 60.0
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 1.2e-117 427.6 444 59.2
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 4.6e-117 425.6 464 56.5
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.3e-116 424.1 448 58.5
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 3.0e-116 422.9 422 62.8
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 6.6e-116 421.8 446 57.8
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 1.5e-115 420.6 456 58.6
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.2e-114 417.5 450 58.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 3.6e-114 416.0 451 58.5
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 4.7e-114 415.6 446 58.5
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.2e-114 415.2 441 59.0
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 6.2e-114 415.2 446 59.6
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 6.8e-113 411.8 453 56.3
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 6.8e-113 411.8 453 57.6
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 2.6e-112 409.8 444 58.1
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 8.3e-111 404.8 421 64.4
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 1.6e-109 400.6 442 57.5
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.6e-109 400.6 480 61.0
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 2.7e-109 399.8 457 56.5
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 3.5e-109 399.4 440 57.5
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 3.0e-108 396.4 454 54.6
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 3.9e-108 396.0 446 57.4
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 2.5e-107 393.3 442 56.8
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 4.3e-107 392.5 442 56.6
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 2.8e-106 389.8 442 55.9
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.6e-104 381.7 386 60.1
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.9e-104 381.3 435 56.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.9e-104 381.3 435 56.1
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.3e-100 370.9 500 50.8
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.0e-100 369.8 444 54.7
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 3.9e-100 369.4 448 56.2
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 2.2e-95 353.6 458 49.8
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.6e-93 347.4 441 51.2
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 4.6e-93 345.9 444 51.8
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 5.1e-92 342.4 423 52.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.9e-91 340.5 444 52.7
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 4.3e-91 339.3 394 56.1
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 5.6e-91 339.0 444 51.8
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.4e-88 329.7 325 61.5
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 9.9e-88 328.2 370 54.6
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-86 324.7 323 64.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.2e-86 322.8 399 52.1
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 6.0e-85 318.9 457 47.7
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 3.3e-83 313.2 419 49.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 9.9e-80 301.6 461 46.4
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.2e-77 294.7 440 44.5
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 7.9e-77 292.0 415 48.0
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 2.4e-73 280.4 349 50.4
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.2e-69 268.1 464 43.1
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 3.7e-66 256.5 278 54.7
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 5.0e-63 246.1 274 55.1
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 2.3e-60 237.3 229 63.3
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.3e-57 226.1 189 71.4
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 6.1e-53 212.6 224 59.8
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 2.4e-49 200.7 344 43.3
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 6.9e-49 199.1 368 42.9
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 4.7e-45 186.4 283 48.1
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 5.1e-44 183.0 232 55.2
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-43 181.8 320 44.1
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-43 181.8 171 61.4
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 9.1e-41 172.2 212 56.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 1.2e-40 171.8 150 65.3
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.5e-40 170.2 378 34.9
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 2.2e-39 167.5 173 57.8
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 2.9e-39 167.2 127 81.1
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.1e-38 165.2 361 37.7
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.0e-35 154.5 452 32.1
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.1e-33 146.7 173 53.8
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 1.7e-31 141.4 436 30.3
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 9.4e-30 135.6 128 61.7
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 6.1e-29 132.9 201 49.3
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.7e-23 114.8 70 80.0
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 3.0e-20 104.0 147 53.1
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.8e-20 102.4 148 47.3
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 4.4e-19 100.1 67 82.1
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 7.5e-19 99.4 91 65.9
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.1e-17 94.0 62 80.6
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 9.5e-14 82.4 107 52.3
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 2.3e-12 77.8 79 57.0
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 3.0e-07 60.8 162 35.8
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 1.5e-06 58.5 37 73.0
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 3.3e-06 57.4 190 32.6
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 3.3e-06 57.4 169 29.0


User provided reference genes

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