Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.0e-42 174.1 92 100.0
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.0e-34 147.5 92 87.0
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 1.8e-28 129.0 91 74.7
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.2e-26 122.1 95 67.4
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.5e-25 119.4 98 67.3
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 5.5e-25 117.5 98 70.4
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.7e-21 105.9 103 58.3
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 4.8e-21 104.4 95 60.0
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.8e-20 102.4 96 58.3
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.6e-19 99.4 97 56.7
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.0e-19 99.0 84 64.3
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 2.7e-19 98.6 93 61.3
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.3e-18 96.3 99 57.6
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 5.0e-18 94.4 99 57.6
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 6.5e-18 94.0 100 56.0
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 8.5e-18 93.6 88 54.5
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.1e-17 93.2 95 56.8
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.5e-17 92.8 97 53.6
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 2.5e-17 92.0 104 52.9
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 3.2e-17 91.7 98 51.0
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 3.2e-17 91.7 98 51.0
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.2e-16 89.7 70 65.7
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 2.1e-16 89.0 90 56.7
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 3.6e-16 88.2 97 56.7
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 4.7e-16 87.8 105 50.5
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 6.1e-16 87.4 92 50.0
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.0e-15 86.7 93 54.8
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 1.4e-15 86.3 93 51.6
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.4e-15 86.3 100 51.0
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.4e-15 86.3 91 53.8
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.4e-15 86.3 84 56.0
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.8e-15 83.6 97 54.6
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.8e-15 83.6 97 54.6
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.2e-14 83.2 104 51.0
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.5e-14 82.8 106 51.9
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.0e-14 82.4 89 47.2
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 2.6e-14 82.0 85 56.5
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 7.5e-14 80.5 91 52.7
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 9.8e-14 80.1 104 49.0
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 9.8e-14 80.1 89 47.2
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 1.3e-13 79.7 85 51.8
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 2.2e-13 79.0 93 51.6
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 2.2e-13 79.0 87 47.1
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 4.9e-13 77.8 72 58.3
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.9e-13 77.8 89 51.7
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 8.3e-13 77.0 81 54.3
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.3e-13 77.0 97 52.6
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 8.3e-13 77.0 97 47.4
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.1e-12 76.6 94 48.9
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.1e-12 76.6 92 52.2
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 2.4e-12 75.5 94 52.1
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 5.4e-12 74.3 48 75.0
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 7.0e-12 73.9 92 46.7
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 7.0e-12 73.9 92 50.0
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 9.2e-12 73.6 95 47.4
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 9.2e-12 73.6 47 66.0
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 2.7e-11 72.0 94 48.9
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 3.5e-11 71.6 92 50.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 4.5e-11 71.2 93 47.3
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 4.5e-11 71.2 80 53.8
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 5.9e-11 70.9 74 59.5
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 1.0e-10 70.1 97 47.4
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 1.7e-10 69.3 93 50.5
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 3.8e-10 68.2 86 45.3
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 6.6e-10 67.4 92 46.7
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 8.6e-10 67.0 94 45.7
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 8.6e-10 67.0 93 46.2
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 1.1e-09 66.6 93 44.1
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.1e-09 66.6 71 56.3
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 1.5e-09 66.2 92 45.7
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 3.3e-09 65.1 84 50.0
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 3.3e-09 65.1 85 41.2
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 4.3e-09 64.7 82 45.1
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 4.3e-09 64.7 47 68.1
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 4.3e-09 64.7 81 43.2
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 5.6e-09 64.3 81 46.9
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 5.6e-09 64.3 70 52.9
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 7.3e-09 63.9 89 48.3
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 7.3e-09 63.9 90 43.3
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 7.3e-09 63.9 100 49.0
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 7.3e-09 63.9 93 45.2
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.2e-08 63.2 83 43.4
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.1e-08 62.4 90 45.6
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 2.1e-08 62.4 74 52.7
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 2.8e-08 62.0 89 40.4
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.6e-08 61.6 78 47.4
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 3.6e-08 61.6 78 47.4
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 4.7e-08 61.2 75 52.0
Prupe.6G068600 Prunus persica HOM05D007574 ORTHO05D007552 8.0e-08 60.5 93 43.0
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 3.0e-07 58.5 94 43.6
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 4.0e-07 58.2 85 47.1
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.5e-06 56.2 86 40.7
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.0e-06 55.8 89 42.7
Os01g0143900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 2.6e-06 55.5 59 50.8
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 3.4e-06 55.1 66 51.5
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 3.4e-06 55.1 86 39.5
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 3.4e-06 55.1 86 39.5
BraA10t45380Z Brassica rapa HOM05D009057 ORTHO05D011698 3.4e-06 55.1 75 46.7
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 4.4e-06 54.7 90 42.2
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 4.4e-06 54.7 83 38.6
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 4.4e-06 54.7 88 40.9
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 4.4e-06 54.7 85 38.8
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 5.7e-06 54.3 86 45.3
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 5.7e-06 54.3 86 40.7
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 5.7e-06 54.3 93 37.6
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 7.5e-06 53.9 85 40.0
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 7.5e-06 53.9 86 40.7
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 9.8e-06 53.5 85 41.2
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 9.8e-06 53.5 71 45.1


User provided reference genes

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