Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.1e-57 226.5 116 100.0
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.4e-38 162.9 119 71.4
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.7e-37 157.9 117 69.2
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 6.7e-36 154.1 116 70.7
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.6e-35 152.1 116 69.8
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 3.3e-35 151.8 116 69.0
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 7.4e-35 150.6 116 69.0
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 7.4e-35 150.6 116 69.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 9.7e-35 150.2 118 65.3
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 2.2e-34 149.1 116 66.4
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 6.3e-34 147.5 113 69.9
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 8.2e-34 147.1 122 65.6
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.4e-33 145.6 121 67.8
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 2.4e-33 145.6 115 67.0
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 2.4e-33 145.6 126 66.7
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.1e-33 145.2 114 68.4
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 3.1e-33 145.2 117 69.2
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 4.1e-33 144.8 118 66.1
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 4.1e-33 144.8 115 68.7
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 7.0e-33 144.1 116 70.7
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 7.0e-33 144.1 112 67.0
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 9.1e-33 143.7 116 68.1
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 9.1e-33 143.7 116 68.1
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.2e-32 143.3 114 69.3
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.5e-32 142.9 115 68.7
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 2.0e-32 142.5 113 68.1
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 3.5e-32 141.7 117 63.2
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 5.9e-32 141.0 111 64.9
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 5.9e-32 141.0 112 65.2
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.0e-31 140.2 84 78.6
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 1.0e-31 140.2 116 65.5
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.0e-31 140.2 114 65.8
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.3e-31 139.8 109 69.7
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.7e-31 139.4 115 64.3
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.7e-31 139.4 122 63.9
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.9e-31 138.7 109 68.8
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.9e-31 138.7 109 68.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 2.9e-31 138.7 116 63.8
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 3.8e-31 138.3 115 67.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 5.0e-31 137.9 118 66.1
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 6.5e-31 137.5 119 65.5
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 6.5e-31 137.5 109 68.8
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 8.5e-31 137.1 115 64.3
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 8.5e-31 137.1 115 65.2
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 1.5e-30 136.3 116 62.1
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.9e-30 136.0 115 64.3
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.9e-30 136.0 115 64.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.5e-30 135.6 109 67.9
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 3.2e-30 135.2 113 66.4
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 3.2e-30 135.2 110 64.5
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 3.2e-30 135.2 116 66.4
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 5.5e-30 134.4 106 65.1
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 7.2e-30 134.0 120 60.0
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 7.2e-30 134.0 102 65.7
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 9.4e-30 133.7 106 67.9
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 9.4e-30 133.7 94 71.3
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 9.4e-30 133.7 114 64.0
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 9.4e-30 133.7 79 81.0
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.2e-29 133.3 106 65.1
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 1.6e-29 132.9 117 61.5
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.6e-29 132.9 115 60.0
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.6e-29 132.9 117 65.8
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.6e-29 132.9 117 65.8
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.6e-29 132.9 117 65.8
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.6e-29 132.9 113 61.9
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.6e-29 132.9 113 61.9
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.1e-29 132.5 118 66.1
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.1e-29 132.5 117 64.1
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 2.7e-29 132.1 118 65.3
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.7e-29 132.1 76 84.2
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.7e-29 132.1 134 58.2
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 2.7e-29 132.1 119 59.7
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.7e-29 132.1 74 83.8
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 3.6e-29 131.7 118 65.3
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 4.7e-29 131.3 122 59.8
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.7e-29 131.3 112 67.0
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 6.1e-29 131.0 118 59.3
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 6.1e-29 131.0 112 61.6
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 8.0e-29 130.6 81 80.2
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 8.0e-29 130.6 113 61.1
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 8.0e-29 130.6 106 63.2
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 8.0e-29 130.6 106 63.2
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.0e-28 130.2 116 63.8
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.0e-28 130.2 81 80.2
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.4e-28 129.8 122 61.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.4e-28 129.8 120 60.8
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.4e-28 129.8 112 61.6
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 1.8e-28 129.4 98 65.3
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.8e-28 129.4 131 57.3
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 2.3e-28 129.0 81 79.0
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 2.3e-28 129.0 81 79.0
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.3e-28 129.0 113 63.7
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 3.0e-28 128.6 112 63.4
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 3.0e-28 128.6 112 63.4
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 3.0e-28 128.6 112 63.4
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.2e-28 127.9 119 63.9
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 6.7e-28 127.5 113 68.1
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 6.7e-28 127.5 76 80.3
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 8.8e-28 127.1 112 60.7
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 1.5e-27 126.3 73 84.9
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.5e-27 126.3 81 79.0
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.5e-27 126.3 80 78.8
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.5e-27 126.3 119 61.3
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 1.5e-27 126.3 114 62.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.0e-27 125.9 117 63.2
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.0e-27 125.9 84 71.4
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 3.3e-27 125.2 115 60.0
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 4.4e-27 124.8 110 60.9
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 7.4e-27 124.0 113 61.1
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 1.3e-26 123.2 119 59.7
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 2.2e-26 122.5 116 62.1
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.2e-26 122.5 80 76.2
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.8e-26 122.1 149 53.0
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.8e-26 122.1 117 59.0
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.8e-25 119.4 114 56.1
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.2e-24 116.7 68 79.4
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 4.5e-24 114.8 64 84.4
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 7.7e-24 114.0 94 63.8
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.0e-23 113.6 64 85.9
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 5.0e-23 111.3 99 60.6
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 6.5e-23 110.9 94 61.7
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 7.2e-22 107.5 73 71.2
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.2e-21 106.7 113 51.3
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 6.1e-21 104.4 59 83.1
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.0e-20 103.6 75 65.3
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.3e-20 102.4 99 58.6
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.6e-19 99.0 70 68.6
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 9.7e-19 97.1 101 53.5
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 9.7e-19 97.1 85 61.2
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-18 96.3 49 91.8
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.7e-18 96.3 98 61.2
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.8e-15 85.1 141 45.4
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 8.5e-15 84.0 73 56.2
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 1.2e-13 80.1 44 84.1
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.1e-13 79.3 47 76.6
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 8.0e-13 77.4 86 48.8
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 8.6e-07 57.4 107 40.2
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 8.6e-07 57.4 70 40.0


User provided reference genes

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