Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.9e-86 322.0 181 100.0
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 2.3e-59 232.6 189 68.8
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.8e-48 196.4 190 61.6
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.2e-47 193.7 191 60.2
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.2e-44 183.7 187 59.4
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.6e-44 183.3 189 59.8
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.2e-42 177.2 187 55.1
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.3e-41 173.7 186 55.9
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.3e-41 173.7 186 55.9
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.3e-41 173.7 186 55.9
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 3.7e-41 172.2 185 54.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 6.3e-41 171.4 184 56.0
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 2.4e-40 169.5 187 54.5
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 2.4e-40 169.5 189 52.4
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 4.1e-40 168.7 187 54.5
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.2e-39 167.2 189 55.0
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.2e-39 167.2 186 54.3
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 5.9e-39 164.9 189 50.8
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 7.8e-39 164.5 186 54.3
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 1.3e-38 163.7 180 54.4
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.7e-38 163.3 186 53.2
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 2.3e-38 162.9 184 51.1
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 5.0e-38 161.8 185 51.9
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 6.6e-38 161.4 191 50.8
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 3.3e-37 159.1 181 51.4
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 3.3e-37 159.1 194 51.5
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 5.6e-37 158.3 188 51.1
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 9.5e-37 157.5 187 48.7
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.2e-36 157.1 189 52.4
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 2.1e-36 156.4 187 50.3
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 2.1e-36 156.4 177 55.9
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 3.6e-36 155.6 182 51.1
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 6.1e-36 154.8 187 50.8
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 4.0e-35 152.1 190 50.5
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.0e-35 152.1 187 50.8
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 5.2e-35 151.8 180 52.8
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 5.2e-35 151.8 187 50.8
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 1.2e-34 150.6 183 50.8
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 2.0e-34 149.8 187 51.3
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.0e-34 149.8 187 47.6
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 2.0e-34 149.8 190 50.5
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.6e-34 149.4 189 49.2
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 2.6e-34 149.4 186 50.5
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 3.4e-34 149.1 188 51.1
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 3.4e-34 149.1 185 51.4
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 9.8e-34 147.5 188 50.5
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-33 147.1 185 50.3
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.3e-33 147.1 190 50.0
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 3.7e-33 145.6 182 47.8
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 4.9e-33 145.2 187 49.7
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 8.3e-33 144.4 183 47.5
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.1e-32 144.1 182 47.3
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.1e-32 144.1 187 48.1
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.9e-32 143.3 183 48.1
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.2e-32 142.5 182 49.5
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.2e-32 142.5 179 48.6
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.1e-32 142.1 172 50.0
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 1.2e-31 140.6 184 46.7
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 2.7e-31 139.4 188 47.3
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 2.7e-31 139.4 180 48.3
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 3.5e-31 139.0 188 47.3
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 4.6e-31 138.7 181 47.5
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 4.6e-31 138.7 193 47.2
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 6.0e-31 138.3 186 49.5
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.8e-31 137.9 189 48.7
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 7.8e-31 137.9 187 46.0
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 2.3e-30 136.3 100 71.0
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 2.3e-30 136.3 187 44.9
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 3.0e-30 136.0 180 47.2
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 1.9e-29 133.3 181 49.2
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.6e-28 130.2 180 47.8
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 2.1e-28 129.8 181 47.0
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.8e-28 129.4 180 46.1
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 2.8e-28 129.4 191 44.5
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.6e-28 129.0 202 46.0
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 3.6e-28 129.0 185 44.9
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 4.7e-28 128.6 185 44.9
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 6.2e-28 128.3 184 44.0
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 8.0e-28 127.9 196 45.4
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 8.0e-28 127.9 181 45.3
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.1e-27 127.5 189 46.0
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.4e-27 127.1 192 45.8
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 1.8e-27 126.7 188 46.8
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.8e-27 126.7 180 47.2
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 2.3e-27 126.3 184 45.7
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 3.1e-27 125.9 185 47.0
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 5.2e-27 125.2 102 66.7
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 6.8e-27 124.8 186 41.9
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 8.9e-27 124.4 189 45.5
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 2.0e-26 123.2 183 45.9
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 4.4e-26 122.1 187 46.5
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 1.3e-25 120.6 197 43.7
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 2.2e-25 119.8 224 39.7
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 2.9e-25 119.4 186 44.1
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 3.7e-25 119.0 181 45.3
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.9e-24 116.7 200 41.5
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.4e-24 116.3 166 47.0
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 2.4e-24 116.3 176 46.6
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 2.4e-24 116.3 204 40.7
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 4.6e-23 112.1 181 42.5
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 6.0e-23 111.7 176 45.5
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.0e-22 110.9 75 72.0
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 3.0e-22 109.4 183 43.2
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 5.1e-22 108.6 181 43.1
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-21 107.5 181 42.0
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-21 107.5 181 42.0
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 1.1e-21 107.5 181 42.0
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 1.5e-21 107.1 183 42.1
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 2.5e-21 106.3 183 43.2
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 3.3e-21 105.9 186 40.9
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 7.3e-21 104.8 110 52.7
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.2e-20 104.0 183 39.3
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.3e-19 99.8 189 40.2
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.6e-18 96.3 82 70.7
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.4e-18 95.9 186 46.2
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 5.8e-18 95.1 131 47.3
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 9.9e-18 94.4 128 47.7
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.3e-17 94.0 185 40.0
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 2.2e-17 93.2 180 37.2
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 8.3e-17 91.3 185 38.9
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 1.9e-16 90.1 125 43.2
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.1e-16 89.0 171 45.6
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.1e-13 80.9 130 43.1
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 2.5e-13 79.7 129 41.9
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 3.3e-13 79.3 106 49.1
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 3.1e-11 72.8 142 36.6
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.0e-11 72.4 91 48.4
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.0e-11 72.4 91 48.4
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 5.2e-11 72.0 102 48.0
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.2e-10 70.9 182 33.5
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 2.6e-10 69.7 138 34.1
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.4e-10 68.9 182 33.0
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 2.9e-09 66.2 192 29.7
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 1.1e-08 64.3 76 50.0
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 2.4e-08 63.2 195 31.8
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 5.4e-08 62.0 95 46.3
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 9.3e-08 61.2 178 33.1
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 2.7e-07 59.7 221 31.2
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 3.5e-07 59.3 226 31.0
Potri.001G242104 Populus trichocarpa HOM05D004998 ORTHO05D050517 7.8e-07 58.2 47 66.0
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 3.0e-06 56.2 56 58.9
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 8.7e-06 54.7 50 60.0


User provided reference genes

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