Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13187 Nelumbo nucifera HOM05D001641 ORTHO05D001667 7.2e-46 186.8 89 100.0
Nn2g13606 Nelumbo nucifera HOM05D001641 ORTHO05D001667 5.9e-16 87.4 50 84.0
Nn2g11369 Nelumbo nucifera HOM05D001641 ORTHO05D001667 8.6e-15 83.6 50 82.0
TAR633G1677 Trochodendron aralioides HOM05D001641 ORTHO05D001667 1.1e-14 83.2 74 60.8
TAR623G0053 Trochodendron aralioides HOM05D001641 ORTHO05D001667 1.5e-14 82.8 50 80.0
Aqoxy1G00708 Aquilegia oxysepala HOM05D001641 ORTHO05D001667 1.2e-13 79.7 48 77.1
PSO339G0414 Papaver somniferum HOM05D001641 ORTHO05D001667 2.8e-13 78.6 50 76.0
PGR031G0169 Punica granatum HOM05D001641 ORTHO05D001667 4.0e-12 74.7 69 58.0
TAR369G0244 Trochodendron aralioides HOM05D001641 ORTHO05D001667 4.0e-12 74.7 48 70.8
Cpa.g.sc163.1 Carica papaya HOM05D001641 ORTHO05D001667 6.8e-12 73.9 50 72.0
Cfa017255 Carpinus fangiana HOM05D001641 ORTHO05D001667 6.8e-12 73.9 50 72.0
Haze_20951 Corylus avellana HOM05D001641 ORTHO05D001667 6.8e-12 73.9 50 72.0
Haze_20953 Corylus avellana HOM05D001641 ORTHO05D001667 6.8e-12 73.9 50 72.0
Manes.08G087800 Manihot esculenta HOM05D001641 ORTHO05D001667 6.8e-12 73.9 69 59.4
Manes.09G102200 Manihot esculenta HOM05D001641 ORTHO05D001667 6.8e-12 73.9 69 59.4
Aqoxy2G00992 Aquilegia oxysepala HOM05D001641 ORTHO05D001667 8.9e-12 73.6 50 70.0
Potri.006G096600 Populus trichocarpa HOM05D001641 ORTHO05D001667 1.2e-11 73.2 50 72.0
Dinv35512 Davidia involucrata HOM05D001641 ORTHO05D001667 1.5e-11 72.8 50 70.0
CiPaw.09G206200 Carya illinoinensis HOM05D001641 ORTHO05D001667 2.0e-11 72.4 50 70.0
Duzib106G0289 Durio zibethinus HOM05D001641 ORTHO05D001667 2.6e-11 72.0 70 58.6
Potri.016G111400 Populus trichocarpa HOM05D001641 ORTHO05D001667 3.4e-11 71.6 50 70.0
Sabra06G0074200 Salix brachista HOM05D001641 ORTHO05D001667 3.4e-11 71.6 50 70.0
Sabra16G0107700 Salix brachista HOM05D001641 ORTHO05D001667 3.4e-11 71.6 50 70.0
TWI53G0423 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 3.4e-11 71.6 48 72.9
Ca_09169_v3 Cicer arietinum L. HOM05D001641 ORTHO05D001667 5.7e-11 70.9 56 67.9
COL.COLO4_14595 Corchorus olitorius HOM05D001641 ORTHO05D001667 5.7e-11 70.9 50 70.0
Duzib093G1558 Durio zibethinus HOM05D001641 ORTHO05D001667 5.7e-11 70.9 50 70.0
Psat3g130960 Pisum sativum HOM05D001641 ORTHO05D001667 5.7e-11 70.9 56 67.9
Thecc.05G021900 Theobroma cacao HOM05D001641 ORTHO05D001667 5.7e-11 70.9 50 70.0
Gohir.A04G088300 Gossypium hirsutum HOM05D001641 ORTHO05D001667 7.5e-11 70.5 50 70.0
Gohir.D04G128700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 7.5e-11 70.5 50 70.0
Gorai.012G111800 Gossypium raimondii HOM05D001641 ORTHO05D001667 7.5e-11 70.5 50 70.0
Medtr7g066730 Medicago truncatula HOM05D001641 ORTHO05D001667 7.5e-11 70.5 56 67.9
Solyc09g014160.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 7.5e-11 70.5 50 68.0
Sopen09g007030 Solanum pennellii HOM05D001641 ORTHO05D001667 7.5e-11 70.5 50 68.0
PGSC0003DMG400020347 Solanum tuberosum HOM05D001641 ORTHO05D001667 7.5e-11 70.5 50 68.0
CANSAT35G1325 Cannabis sativa HOM05D001641 ORTHO05D001667 1.3e-10 69.7 50 70.0
MD04G1147100 Malus domestica HOM05D001641 ORTHO05D001667 1.3e-10 69.7 50 70.0
MD12G1160400 Malus domestica HOM05D001641 ORTHO05D001667 1.3e-10 69.7 50 70.0
Prupe.6G270900 Prunus persica HOM05D001641 ORTHO05D001667 1.3e-10 69.7 50 70.0
Zm00001eb288720 Zea mays HOM05D001641 ORTHO05D001667 1.3e-10 69.7 50 64.0
Lj2C80T3 Lonicera japonica HOM05D001641 ORTHO05D001667 1.7e-10 69.3 50 68.0
Cfa021558 Carpinus fangiana HOM05D001641 ORTHO05D001667 2.2e-10 68.9 48 72.9
Os05g0450600 Oryza sativa ssp. japonica HOM05D001641 ORTHO05D001667 2.2e-10 68.9 50 68.0
MELO3C003225.2 Cucumis melo HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 66.0
CsaV3_4G026000 Cucumis sativus L. HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 66.0
Duzib128G0887 Durio zibethinus HOM05D001641 ORTHO05D001667 2.8e-10 68.6 71 54.9
FvH4_6g12000 Fragaria vesca HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 68.0
FAN02G3953 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 68.0
FAN05G0357 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 68.0
FAN09G4135 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 68.0
FAN14G1423 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 68.0
FAN14G4770 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 68.0
RcHm_v2.0_Chr3g0463831 Rosa chinensis HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 68.0
Zm00001eb348150 Zea mays HOM05D001641 ORTHO05D001667 2.8e-10 68.6 50 64.0
ClCG04G007240 Citrullus lanatus HOM05D001641 ORTHO05D001667 3.7e-10 68.2 68 55.9
Ciclev10011239m.g Citrus clementina HOM05D001641 ORTHO05D001667 3.7e-10 68.2 50 66.0
Lj1g0001530 Lotus japonicus HOM05D001641 ORTHO05D001667 3.7e-10 68.2 56 66.1
Lalb_Chr01g0022911 Lupinus albus HOM05D001641 ORTHO05D001667 3.7e-10 68.2 50 68.0
Sed0017639 Sechium edule HOM05D001641 ORTHO05D001667 3.7e-10 68.2 50 66.0
Atru.chr8.2199 Acer truncatum HOM05D001641 ORTHO05D001667 4.9e-10 67.8 50 66.0
CDE03G0073 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 4.9e-10 67.8 54 63.0
Dinv37084 Davidia involucrata HOM05D001641 ORTHO05D001667 4.9e-10 67.8 50 66.0
TWI77G0066 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 4.9e-10 67.8 50 64.0
Cc06_g01660 Coffea canephora HOM05D001641 ORTHO05D001667 6.3e-10 67.4 50 66.0
Solyc10g085070.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 6.3e-10 67.4 48 72.9
Sopen10g034530 Solanum pennellii HOM05D001641 ORTHO05D001667 6.3e-10 67.4 48 72.9
PGSC0003DMG400011018 Solanum tuberosum HOM05D001641 ORTHO05D001667 6.3e-10 67.4 48 72.9
Hma1.2p1_0244F.1_g101220 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 8.3e-10 67.0 50 66.0
CAN.G1297.3 Capsicum annuum HOM05D001641 ORTHO05D001667 1.1e-09 66.6 48 72.9
CDE04G1343 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 1.1e-09 66.6 54 63.0
TPR.G1584 Trifolium pratense HOM05D001641 ORTHO05D001667 1.1e-09 66.6 56 64.3
TWI74G0768 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 1.4e-09 66.2 50 62.0
Zm00001eb086140 Zea mays HOM05D001641 ORTHO05D001667 1.4e-09 66.2 64 54.7
AUR62025773 Chenopodium quinoa HOM05D001641 ORTHO05D001667 1.8e-09 65.9 85 47.1
AUR62041358 Chenopodium quinoa HOM05D001641 ORTHO05D001667 1.8e-09 65.9 85 47.1
Dinv28606 Davidia involucrata HOM05D001641 ORTHO05D001667 1.8e-09 65.9 48 64.6
Peaxi162Scf00009g00195 Petunia axillaris HOM05D001641 ORTHO05D001667 1.8e-09 65.9 48 68.8
HPP92_018190 Vanilla planifolia HOM05D001641 ORTHO05D001667 4.1e-09 64.7 73 50.7
Gohir.A11G328700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 5.4e-09 64.3 70 55.7
Gohir.D11G347700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 5.4e-09 64.3 70 55.7
GSVIVG01024799001 Vitis vinifera HOM05D001641 ORTHO05D001667 5.4e-09 64.3 50 62.0
Nitab4.5_0000652g0140 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.6e-08 62.8 48 66.7
Nitab4.5_0004912g0080 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.6e-08 62.8 48 66.7
ClCG10G021840 Citrullus lanatus HOM05D001641 ORTHO05D001667 2.7e-08 62.0 48 64.6
MELO3C009191.2 Cucumis melo HOM05D001641 ORTHO05D001667 2.7e-08 62.0 48 64.6
CsaV3_3G034150 Cucumis sativus L. HOM05D001641 ORTHO05D001667 2.7e-08 62.0 48 64.6
Aa31LG3G1600 Aethionema arabicum HOM05D001641 ORTHO05D001667 3.5e-08 61.6 70 50.0
Phvul.008G107800 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 3.5e-08 61.6 50 66.0
Sc01g0006830 Simmondsia chinensis HOM05D001641 ORTHO05D001667 3.5e-08 61.6 55 54.5
VMungo1383G3096 Vigna mungo HOM05D001641 ORTHO05D001667 3.5e-08 61.6 50 66.0
Gorai.007G378100 Gossypium raimondii HOM05D001641 ORTHO05D001667 5.9e-08 60.8 70 54.3
Phvul.010G008500 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 7.8e-08 60.5 48 62.5
VMungo0331G1007 Vigna mungo HOM05D001641 ORTHO05D001667 7.8e-08 60.5 48 62.5
arahy.Tifrunner.gnm1.ann1.JIF81Q Arachis hypogaea HOM05D001641 ORTHO05D001667 1.3e-07 59.7 50 62.0
arahy.Tifrunner.gnm1.ann1.UC3VQR Arachis hypogaea HOM05D001641 ORTHO05D001667 1.3e-07 59.7 50 62.0
Glyma.03G077200 Glycine max HOM05D001641 ORTHO05D001667 1.3e-07 59.7 48 62.5
Os01g0852400 Oryza sativa ssp. japonica HOM05D001641 ORTHO05D001667 1.3e-07 59.7 50 60.0
Sabra09G0029700 Salix brachista HOM05D001641 ORTHO05D001667 1.7e-07 59.3 47 63.8
Glyma.01G111900 Glycine max HOM05D001641 ORTHO05D001667 2.3e-07 58.9 48 62.5
MBI05_g03457_MAGBIO Magnolia biondii HOM05D001641 ORTHO05D001667 2.3e-07 58.9 48 60.4
arahy.Tifrunner.gnm1.ann1.4BEG1R Arachis hypogaea HOM05D001641 ORTHO05D001667 2.9e-07 58.5 50 62.0
CDE02G3996 Ceratophyllum demersum HOM05D001641 ORTHO05D001667 2.9e-07 58.5 51 54.9
Glyma.07G144900 Glycine max HOM05D001641 ORTHO05D001667 2.9e-07 58.5 48 68.8
Sp4g20390 Schrenkiella parvula HOM05D001641 ORTHO05D001667 2.9e-07 58.5 50 56.0
Zm00001eb367430 Zea mays HOM05D001641 ORTHO05D001667 2.9e-07 58.5 59 55.9
Carub.0004s2004 Capsella rubella HOM05D001641 ORTHO05D001667 5.0e-07 57.8 61 49.2
Aa31LG5G23620 Aethionema arabicum HOM05D001641 ORTHO05D001667 6.6e-07 57.4 37 67.6
PSO339G5641 Papaver somniferum HOM05D001641 ORTHO05D001667 6.6e-07 57.4 46 56.5
PSO384G4022 Papaver somniferum HOM05D001641 ORTHO05D001667 6.6e-07 57.4 46 56.5
THA.LOC104824521 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 6.6e-07 57.4 34 73.5
Sed0022239 Sechium edule HOM05D001641 ORTHO05D001667 8.6e-07 57.0 61 50.8
THA.LOC104827040 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 8.6e-07 57.0 70 48.6
Hma1.2p1_0227F.1_g096230 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 1.1e-06 56.6 50 58.0
Sc07g0006840 Simmondsia chinensis HOM05D001641 ORTHO05D001667 1.1e-06 56.6 47 63.8
THA.LOC104805788 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 1.1e-06 56.6 68 44.1
AT2G38070 Arabidopsis thaliana HOM05D001641 ORTHO05D001667 1.5e-06 56.2 66 47.0
CARHR132650 Cardamine hirsuta HOM05D001641 ORTHO05D001667 1.5e-06 56.2 34 70.6
AUR62020090 Chenopodium quinoa HOM05D001641 ORTHO05D001667 1.5e-06 56.2 76 40.8
ClCG02G019720 Citrullus lanatus HOM05D001641 ORTHO05D001667 1.5e-06 56.2 50 58.0
Thhalv10017664m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 1.5e-06 56.2 34 70.6
Potri.009G042200 Populus trichocarpa HOM05D001641 ORTHO05D001667 1.5e-06 56.2 47 61.7
EL10Ac7g16119 Beta vulgaris HOM05D001641 ORTHO05D001667 1.9e-06 55.8 48 54.2
Migut.N00817 Erythranthe guttata HOM05D001641 ORTHO05D001667 1.9e-06 55.8 49 59.2
Peaxi162Scf00141g00081 Petunia axillaris HOM05D001641 ORTHO05D001667 1.9e-06 55.8 50 58.0
MELO3C025873.2 Cucumis melo HOM05D001641 ORTHO05D001667 2.5e-06 55.5 48 58.3
Hma1.2p1_0763F.1_g214660 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 2.5e-06 55.5 50 56.0
Sed0016143 Sechium edule HOM05D001641 ORTHO05D001667 2.5e-06 55.5 50 60.0
Zm00001eb147740 Zea mays HOM05D001641 ORTHO05D001667 2.5e-06 55.5 50 54.0
AUR62001692 Chenopodium quinoa HOM05D001641 ORTHO05D001667 3.3e-06 55.1 76 40.8
Manes.01G165100 Manihot esculenta HOM05D001641 ORTHO05D001667 3.3e-06 55.1 48 60.4
CANSAT21G2528 Cannabis sativa HOM05D001641 ORTHO05D001667 4.3e-06 54.7 47 59.6
Potri.001G248400 Populus trichocarpa HOM05D001641 ORTHO05D001667 4.3e-06 54.7 48 60.4
AL4G35070 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 5.6e-06 54.3 34 70.6
EL10Ac7g17865 Beta vulgaris HOM05D001641 ORTHO05D001667 5.6e-06 54.3 48 52.1
Lj6g0007371 Lotus japonicus HOM05D001641 ORTHO05D001667 5.6e-06 54.3 50 56.0
Nitab4.5_0000008g0730 Nicotiana tabacum HOM05D001641 ORTHO05D001667 5.6e-06 54.3 50 54.0
Nitab4.5_0001837g0010 Nicotiana tabacum HOM05D001641 ORTHO05D001667 5.6e-06 54.3 50 54.0
Prupe.6G061700 Prunus persica HOM05D001641 ORTHO05D001667 5.6e-06 54.3 84 40.5
AL6G11020 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 7.3e-06 53.9 75 48.0
Carub.0006s0072 Capsella rubella HOM05D001641 ORTHO05D001667 7.3e-06 53.9 70 45.7
Lj3g0020538 Lotus japonicus HOM05D001641 ORTHO05D001667 7.3e-06 53.9 55 54.5
HPP92_018038 Vanilla planifolia HOM05D001641 ORTHO05D001667 7.3e-06 53.9 90 40.0
Oeu044361.1 Olea europaea HOM05D001641 ORTHO05D001667 9.5e-06 53.5 48 56.2
Sabra16G0150700 Salix brachista HOM05D001641 ORTHO05D001667 9.5e-06 53.5 48 58.3


User provided reference genes

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