Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 2.2e-228 795.4 445 100.0
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 8.1e-114 414.8 447 60.6
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.1e-69 267.3 446 41.7
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 6.1e-69 265.8 442 46.4
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 5.7e-59 232.6 441 40.6
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.4e-57 228.0 450 42.2
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.6e-56 224.6 448 38.4
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 1.1e-54 218.4 440 43.9
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.2e-54 216.5 436 36.7
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 7.2e-54 215.7 444 39.0
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 5.7e-51 206.1 447 36.7
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 2.2e-50 204.1 445 35.3
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.8e-50 203.8 445 36.2
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.7e-50 203.4 445 36.4
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 7.0e-49 199.1 450 37.8
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.2e-48 198.4 456 33.6
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 2.9e-47 193.7 435 33.8
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 4.2e-46 189.9 423 39.2
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.1e-45 187.6 352 37.8
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 4.7e-45 186.4 422 33.2
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 4.7e-45 186.4 447 36.7
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 6.1e-45 186.0 460 36.3
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.0e-44 185.3 458 38.0
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 4.4e-43 179.9 422 35.1
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.3e-42 178.3 432 33.6
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.8e-42 177.2 456 36.6
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.9e-42 176.4 456 33.8
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 4.1e-41 173.3 447 35.8
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 3.5e-40 170.2 428 35.3
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.7e-40 169.1 444 31.8
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.7e-39 167.9 436 30.0
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 3.8e-39 166.8 436 32.6
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 6.6e-39 166.0 441 33.1
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.1e-38 165.2 419 32.9
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.1e-38 165.2 441 31.3
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.2e-37 161.8 447 31.5
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.6e-37 161.4 447 35.3
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.0e-36 158.7 464 33.8
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 5.2e-36 156.4 429 32.2
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 6.8e-36 156.0 439 29.8
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 8.9e-36 155.6 442 36.2
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.2e-35 155.2 449 29.6
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 2.0e-35 154.5 413 32.9
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 1.7e-34 151.4 453 31.8
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 8.3e-34 149.1 426 31.9
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.1e-33 148.7 421 30.6
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.4e-33 148.3 439 31.4
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.4e-33 148.3 334 35.3
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 1.4e-33 148.3 447 31.1
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.7e-31 141.4 436 33.0
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 2.9e-31 140.6 429 31.9
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 5.0e-31 139.8 430 30.5
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 6.6e-31 139.4 439 32.8
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 8.6e-31 139.0 435 31.0
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 8.6e-31 139.0 449 30.3
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.9e-30 137.9 452 31.6
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 1.9e-30 137.9 454 29.5
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 7.3e-30 136.0 447 33.1
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.6e-29 134.8 459 31.6
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.8e-29 134.0 447 30.4
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 2.8e-29 134.0 437 31.1
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 2.8e-29 134.0 421 34.4
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 3.6e-29 133.7 446 31.6
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 3.6e-29 133.7 458 31.9
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.2e-29 132.9 433 30.3
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.3e-28 131.0 462 30.1
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 3.1e-28 130.6 418 31.8
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 5.2e-28 129.8 446 32.5
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.2e-28 129.8 425 31.1
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.8e-28 129.4 452 27.2
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.2e-27 128.6 328 38.1
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 1.2e-27 128.6 451 29.7
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 2.6e-27 127.5 434 34.1
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.8e-27 126.3 434 33.2
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 5.8e-27 126.3 448 30.8
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 7.5e-27 125.9 452 28.5
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 7.5e-27 125.9 458 28.6
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 1.7e-26 124.8 357 33.9
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.7e-26 124.8 352 34.4
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 2.9e-26 124.0 317 34.4
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.9e-26 124.0 442 30.1
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 3.7e-26 123.6 438 31.1
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.7e-26 123.6 429 33.3
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 8.3e-26 122.5 431 29.0
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 1.1e-25 122.1 437 30.4
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.2e-25 120.6 421 32.8
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 3.2e-25 120.6 452 29.9
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 3.2e-25 120.6 449 32.3
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 4.1e-25 120.2 442 31.7
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 9.2e-25 119.0 358 33.2
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.2e-24 118.6 473 29.8
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 1.6e-24 118.2 426 31.0
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 4.6e-24 116.7 425 30.1
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 4.6e-24 116.7 422 27.7
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 7.8e-24 115.9 469 28.6
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.3e-23 115.2 416 28.1
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.3e-23 114.4 425 29.9
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 2.3e-23 114.4 459 28.3
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 3.9e-23 113.6 312 32.4
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 8.6e-23 112.5 467 29.1
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.1e-22 112.1 345 28.4
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.5e-22 111.7 428 29.9
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 1.5e-22 111.7 448 28.1
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 2.5e-22 110.9 465 28.0
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 2.5e-22 110.9 201 39.3
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 4.3e-22 110.2 461 28.2
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 9.5e-22 109.0 433 28.9
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.6e-21 108.2 455 29.0
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 2.1e-21 107.8 171 40.4
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.7e-21 106.7 187 39.0
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.4e-20 105.1 162 41.4
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 1.4e-20 105.1 457 29.1
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.8e-20 104.8 191 38.7
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 5.2e-20 103.2 307 31.3
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.2e-20 103.2 339 31.0
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.8e-20 102.8 187 38.5
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 1.2e-19 102.1 435 27.8
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.2e-19 102.1 438 27.6
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.5e-19 101.7 177 39.5
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.0e-19 101.3 424 25.9
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 2.0e-19 101.3 432 28.0
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 7.5e-19 99.4 467 26.6
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 7.5e-19 99.4 435 26.4
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 1.3e-18 98.6 150 40.0
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.2e-18 97.8 431 28.1
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.1e-17 95.5 432 26.4
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 2.4e-17 94.4 451 34.1
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 2.4e-17 94.4 441 27.0
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 7.1e-17 92.8 164 39.6
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 1.2e-16 92.0 447 29.8
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 3.5e-16 90.5 169 36.1
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 4.6e-16 90.1 117 43.6
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 7.8e-16 89.4 452 27.0
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 7.8e-16 89.4 429 25.2
TAR636G2889 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.0e-15 89.0 155 42.6
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 1.3e-15 88.6 167 39.5
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 1.7e-15 88.2 438 27.4
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 1.7e-15 88.2 363 27.8
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 2.3e-15 87.8 429 26.6
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 3.9e-15 87.0 437 28.1
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 5.1e-15 86.7 160 38.8
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 6.6e-15 86.3 431 28.3
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 8.6e-15 85.9 427 28.1
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.5e-14 85.1 161 38.5
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.5e-14 85.1 161 38.5
Nn1g03201 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.9e-14 84.7 54 87.0
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 1.9e-14 84.7 174 35.1
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 1.9e-14 84.7 427 26.2
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.3e-14 84.0 363 28.7
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 5.6e-14 83.2 337 29.4
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 7.3e-14 82.8 452 26.5
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 9.5e-14 82.4 363 28.4
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 9.5e-14 82.4 353 28.3
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 9.5e-14 82.4 161 37.3
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 1.2e-13 82.0 450 27.3
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 4.7e-13 80.1 449 26.5
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 4.7e-13 80.1 337 31.8
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 6.2e-13 79.7 410 26.6
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 8.1e-13 79.3 128 41.4
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 1.8e-12 78.2 448 28.1
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 1.8e-12 78.2 460 25.0
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 6.8e-12 76.3 447 27.3
Lalb_Chr12g0207011 Lupinus albus HOM05D003726 ORTHO05D003520 6.8e-12 76.3 127 36.2
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 1.2e-11 75.5 179 35.8
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 1.2e-11 75.5 179 35.8
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 1.5e-11 75.1 157 37.6
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 2.6e-11 74.3 428 26.9
THA.LOC104816197 Tarenaya hassleriana HOM05D013727 ORTHO05D003520 1.3e-10 72.0 459 23.7
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 8.4e-10 69.3 196 36.2
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 8.4e-10 69.3 188 34.6
Sc07g0006660 Simmondsia chinensis HOM05D003726 ORTHO05D003520 5.4e-09 66.6 132 35.6
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 7.1e-09 66.2 448 23.7
HanXRQChr05g0135801 Helianthus annuus HOM05D003726 ORTHO05D003520 7.1e-09 66.2 194 33.0
MSTRG.12680 Avicennia marina HOM05D003726 ORTHO05D003520 1.2e-08 65.5 445 27.4
ECA236G2409 Erigeron canadensis HOM05D000674 ORTHO05D001490 1.6e-08 65.1 190 33.7
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.5e-08 63.9 104 42.3
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 7.8e-08 62.8 189 31.7
Actinidia20741 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.3e-07 62.0 309 26.5
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 2.3e-07 61.2 427 23.2
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 3.3e-06 57.4 440 23.6
arahy.Tifrunner.gnm1.ann1.142K7L Arachis hypogaea HOM05D003726 ORTHO05D003520 5.6e-06 56.6 149 31.5
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 5.6e-06 56.6 183 29.5
arahy.Tifrunner.gnm1.ann1.71KX3G Arachis hypogaea HOM05D003726 ORTHO05D003520 9.6e-06 55.8 149 31.5


User provided reference genes

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