Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 1.3e-249 865.9 438 100.0
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 7.0e-211 737.3 431 84.9
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 3.8e-209 731.5 436 82.8
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 2.0e-205 719.2 432 83.8
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 7.5e-205 717.2 430 83.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 3.0e-201 705.3 430 81.9
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 8.6e-201 703.7 430 81.9
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.5e-200 702.2 436 80.0
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.7e-199 698.0 436 79.4
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 8.3e-196 687.2 427 80.6
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 3.2e-195 685.3 427 79.4
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 7.0e-195 684.1 436 78.2
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 7.0e-195 684.1 428 79.9
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.2e-195 683.7 428 80.4
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-194 683.3 429 80.4
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.2e-194 683.3 429 80.4
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 2.1e-194 682.6 432 79.4
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 2.7e-194 682.2 431 79.1
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.7e-194 682.2 432 77.8
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 3.5e-194 681.8 430 79.1
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.0e-194 681.0 429 80.0
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.0e-193 680.2 431 78.9
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.3e-193 679.9 428 79.7
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-193 679.9 428 79.9
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.7e-193 679.5 402 82.6
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 2.3e-193 679.1 431 78.0
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 2.3e-193 679.1 432 77.5
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 3.0e-193 678.7 437 77.8
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 5.1e-193 677.9 431 78.0
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 5.1e-193 677.9 428 78.7
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 5.1e-193 677.9 429 77.6
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 6.6e-193 677.6 432 77.3
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 8.6e-193 677.2 429 79.0
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.1e-192 676.8 436 76.8
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-192 676.4 427 79.4
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.5e-192 676.4 427 79.4
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.5e-192 676.4 429 79.0
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.5e-192 675.6 428 79.7
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 3.3e-192 675.2 431 77.7
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 5.6e-192 674.5 427 78.2
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 5.6e-192 674.5 427 78.2
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 5.6e-192 674.5 427 79.6
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 5.6e-192 674.5 430 77.2
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 9.5e-192 673.7 440 77.3
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 9.5e-192 673.7 430 79.5
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 9.5e-192 673.7 432 77.1
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.2e-191 673.3 382 86.6
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.6e-191 672.9 435 79.1
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.6e-191 672.9 432 77.1
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 2.8e-191 672.2 430 77.7
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.6e-191 671.8 432 77.5
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 3.6e-191 671.8 427 79.9
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 3.6e-191 671.8 428 78.3
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 4.7e-191 671.4 430 76.5
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.7e-191 671.4 428 78.7
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 4.7e-191 671.4 428 78.7
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 4.7e-191 671.4 431 77.3
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 8.1e-191 670.6 428 77.8
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.1e-190 670.2 420 79.5
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 77.8
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 78.3
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 77.8
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 77.8
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 78.3
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.1e-190 670.2 428 78.3
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.4e-190 669.8 452 75.7
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.8e-190 669.5 430 77.0
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 2.3e-190 669.1 437 77.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 4.0e-190 668.3 432 78.2
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.0e-190 668.3 427 78.5
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 5.2e-190 667.9 437 76.4
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 5.2e-190 667.9 435 78.6
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 6.8e-190 667.5 442 76.2
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.2e-189 666.8 431 77.7
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 2.6e-189 665.6 427 78.5
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 3.4e-189 665.2 430 77.9
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 3.4e-189 665.2 437 76.4
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 3.4e-189 665.2 428 77.6
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-189 665.2 427 79.6
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 4.4e-189 664.8 437 76.4
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 4.4e-189 664.8 428 77.6
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 4.4e-189 664.8 428 77.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 7.5e-189 664.1 428 77.6
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 7.5e-189 664.1 428 77.6
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.5e-189 664.1 435 78.2
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 9.9e-189 663.7 428 77.3
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.3e-188 663.3 428 78.0
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.7e-188 662.9 430 76.5
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.7e-188 662.9 430 76.7
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.7e-188 662.9 460 73.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.2e-188 662.5 429 77.6
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 2.2e-188 662.5 427 77.3
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 3.7e-188 661.8 428 78.0
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 8.3e-188 660.6 428 77.1
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 8.3e-188 660.6 439 78.4
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.3e-188 660.6 428 77.6
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.3e-188 660.6 428 77.6
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.4e-187 659.8 428 77.1
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.2e-186 656.8 427 77.8
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 2.1e-186 656.0 432 75.5
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 2.1e-186 656.0 432 77.3
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 2.7e-186 655.6 437 76.9
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 6.0e-186 654.4 429 75.8
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.0e-185 653.7 428 76.2
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 2.3e-185 652.5 380 83.4
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 2.3e-185 652.5 430 75.3
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.5e-184 649.8 429 76.7
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 1.9e-184 649.4 400 80.0
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 5.6e-184 647.9 551 63.0
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-183 646.7 428 75.0
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 3.6e-183 645.2 442 74.0
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.8e-182 641.0 474 71.5
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.2e-181 640.2 435 74.7
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.5e-181 639.8 476 70.6
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.6e-181 639.0 431 75.2
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 7.6e-181 637.5 507 66.9
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 9.9e-181 637.1 431 74.5
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 9.9e-181 637.1 426 75.1
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 4.9e-180 634.8 430 74.4
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 8.4e-180 634.0 435 75.9
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 6.0e-178 627.9 435 73.3
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 1.5e-176 623.2 432 74.5
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 7.3e-176 620.9 431 74.0
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 9.6e-176 620.5 402 75.9
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 6.2e-175 617.8 412 77.2
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 1.4e-174 616.7 437 71.4
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 3.4e-173 612.1 380 79.7
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 3.4e-173 612.1 434 71.4
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 2.2e-172 609.4 382 77.2
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.8e-172 608.6 430 73.7
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 4.9e-172 608.2 422 72.7
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.7e-169 599.7 398 72.6
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 5.4e-163 578.2 353 79.6
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 3.9e-161 572.0 364 80.5
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 3.3e-160 568.9 363 77.4
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.2e-154 550.4 350 79.4
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 2.1e-154 549.7 343 81.0
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 6.7e-153 544.7 335 80.3
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.1e-152 543.9 336 81.5
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.5e-149 533.5 432 64.8
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.1e-147 527.3 358 71.2
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 9.3e-147 524.2 331 77.9
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 3.0e-145 519.2 381 68.2
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 5.1e-145 518.5 427 63.9
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 6.7e-145 518.1 372 68.8
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 2.0e-141 506.5 385 67.8
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.3e-140 503.8 345 73.9
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.1e-128 464.2 261 86.2
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.4e-126 457.2 316 70.9
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.6e-117 427.2 264 78.8
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 9.4e-115 417.9 381 58.5
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.6e-114 417.2 256 82.0
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 1.3e-100 370.9 229 82.1
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 7.8e-93 345.1 233 74.7
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.7e-92 344.0 244 70.9
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.3e-84 317.8 188 82.4
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.1e-81 308.1 367 45.2
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 1.4e-81 307.8 355 50.4
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 7.5e-80 302.0 180 81.7
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 5.4e-70 269.2 154 80.5
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.8e-65 252.3 197 63.5
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.8e-65 252.3 197 63.5
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.5e-59 233.8 146 77.4
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.6e-58 229.9 220 61.4
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-54 218.0 244 54.5
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 4.0e-41 173.3 158 60.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 7.6e-40 169.1 100 82.0
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 4.8e-34 149.8 220 48.2
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.2e-29 135.2 297 36.7
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.4e-25 121.7 82 74.4
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 2.5e-22 110.9 60 91.7
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 8.8e-20 102.4 82 67.1
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 6.3e-18 96.3 63 76.2
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 6.3e-18 96.3 63 76.2
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.4e-17 95.1 79 63.3
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.5e-16 91.7 90 54.4
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 8.5e-15 85.9 83 56.6
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 2.5e-14 84.3 46 82.6
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 2.1e-13 81.3 47 83.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 5.9e-08 63.2 73 45.2
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 2.2e-07 61.2 38 71.1
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 2.2e-07 61.2 73 46.6
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 2.2e-07 61.2 43 69.8
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 1.9e-06 58.2 73 45.2
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 2.5e-06 57.8 39 64.1
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 4.2e-06 57.0 28 75.0


User provided reference genes

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