Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13070 Nelumbo nucifera HOM05D007207 ORTHO05D009041 1.4e-116 423.3 273 100.0
TAR633G1504 Trochodendron aralioides HOM05D000656 ORTHO05D000871 2.3e-34 150.2 96 78.1
Sed0024734 Sechium edule HOM05D007207 ORTHO05D009041 3.6e-32 142.9 96 70.8
PSO339G6489 Papaver somniferum HOM05D007207 ORTHO05D009041 1.1e-31 141.4 105 67.6
PSO063G2032 Papaver somniferum HOM05D007207 ORTHO05D009041 4.0e-31 139.4 100 69.0
Hma1.2p1_1030F.1_g249850 Hydrangea macrophylla HOM05D007207 ORTHO05D009041 2.0e-30 137.1 111 63.1
Gohir.A07G117400 Gossypium hirsutum HOM05D007207 ORTHO05D009041 1.3e-29 134.4 96 65.6
Thecc.09G257600 Theobroma cacao HOM05D007207 ORTHO05D009041 1.3e-29 134.4 100 68.0
CANSAT54G0517 Cannabis sativa HOM05D007207 ORTHO05D009041 4.9e-29 132.5 94 68.1
Duzib170G0585 Durio zibethinus HOM05D007207 ORTHO05D009041 4.9e-29 132.5 94 67.0
Gorai.001G131300 Gossypium raimondii HOM05D007207 ORTHO05D009041 4.9e-29 132.5 96 65.6
MD03G1114400 Malus domestica HOM05D007207 ORTHO05D009041 6.4e-29 132.1 99 61.6
TWI79G0777 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 6.4e-29 132.1 103 66.0
Duzib168G2405 Durio zibethinus HOM05D007207 ORTHO05D009041 8.4e-29 131.7 100 63.0
MBI11_g23474_MAGBIO Magnolia biondii HOM05D007207 ORTHO05D009041 8.4e-29 131.7 93 71.0
CiPaw.13G111000 Carya illinoinensis HOM05D007207 ORTHO05D009041 1.1e-28 131.3 95 68.4
Gohir.D07G121800 Gossypium hirsutum HOM05D007207 ORTHO05D009041 1.1e-28 131.3 96 64.6
TAR636G0495 Trochodendron aralioides HOM05D007207 ORTHO05D009041 1.4e-28 131.0 99 71.7
QL01p022653 Quercus lobata HOM05D007207 ORTHO05D009041 4.2e-28 129.4 100 65.0
QL01p022696 Quercus lobata HOM05D007207 ORTHO05D009041 2.7e-27 126.7 100 64.0
THA.LOC104815749 Tarenaya hassleriana HOM05D007207 ORTHO05D009041 2.7e-27 126.7 100 61.0
Actinidia20448 Actinidia chinensis HOM05D007207 ORTHO05D009041 4.6e-27 125.9 95 68.4
Hund08142 Selenicereus undatus HOM05D007207 ORTHO05D009041 4.6e-27 125.9 109 57.8
Ciclev10030232m.g Citrus clementina HOM05D007207 ORTHO05D009041 6.0e-27 125.6 95 62.1
Dinv32761 Davidia involucrata HOM05D007207 ORTHO05D009041 1.8e-26 124.0 89 69.7
Phvul.011G077500 Phaseolus vulgaris HOM05D007207 ORTHO05D009041 2.3e-26 123.6 92 63.0
Potri.009G012300 Populus trichocarpa HOM05D007207 ORTHO05D009041 2.3e-26 123.6 97 63.9
EL10Ac9g22498 Beta vulgaris HOM05D007207 ORTHO05D009041 3.0e-26 123.2 103 60.2
CAN.G934.2 Capsicum annuum HOM05D007207 ORTHO05D009041 3.9e-26 122.9 99 64.6
Peaxi162Scf00686g00043 Petunia axillaris HOM05D007207 ORTHO05D009041 3.9e-26 122.9 99 63.6
VMungo1127G1112 Vigna mungo HOM05D007207 ORTHO05D009041 5.1e-26 122.5 115 55.7
Solyc06g016750.3 Solanum lycopersicum HOM05D007207 ORTHO05D009041 8.7e-26 121.7 102 61.8
Ca_05249_v3 Cicer arietinum L. HOM05D007207 ORTHO05D009041 1.1e-25 121.3 94 64.9
Sopen06g007140 Solanum pennellii HOM05D007207 ORTHO05D009041 1.1e-25 121.3 102 61.8
Lsat_1_v5_gn_1_65500 Lactuca sativa HOM05D007207 ORTHO05D009041 1.9e-25 120.6 96 62.5
Manes.04G022800 Manihot esculenta HOM05D007207 ORTHO05D009041 1.9e-25 120.6 95 60.0
FvH4_3g32640 Fragaria vesca HOM05D007207 ORTHO05D009041 3.3e-25 119.8 93 62.4
FAN11G2184 Fragaria x ananassa HOM05D007207 ORTHO05D009041 3.3e-25 119.8 93 62.4
AUR62039621 Chenopodium quinoa HOM05D007207 ORTHO05D009041 4.3e-25 119.4 102 60.8
Cc01_g11290 Coffea canephora HOM05D007207 ORTHO05D009041 4.3e-25 119.4 94 59.6
Sc06g0010040 Simmondsia chinensis HOM05D007207 ORTHO05D009041 4.3e-25 119.4 99 61.6
FAN25G0070 Fragaria x ananassa HOM05D007207 ORTHO05D009041 7.4e-25 118.6 92 62.0
MSTRG.17815 Avicennia marina HOM05D007207 ORTHO05D009041 2.1e-24 117.1 94 59.6
RcHm_v2.0_Chr5g0059711 Rosa chinensis HOM05D007207 ORTHO05D009041 2.1e-24 117.1 93 61.3
Medtr4g059710 Medicago truncatula HOM05D007207 ORTHO05D009041 3.7e-24 116.3 88 64.8
TWI75G1762 Tripterygium wilfordii HOM05D007207 ORTHO05D009041 4.8e-24 115.9 103 60.2
Rhsim01G0217900 Rhododendron simsii HOM05D007207 ORTHO05D009041 6.2e-24 115.5 140 48.6
GSVIVG01025169001 Vitis vinifera HOM05D007207 ORTHO05D009041 6.2e-24 115.5 89 65.2
FAN21G0351 Fragaria x ananassa HOM05D007207 ORTHO05D009041 1.1e-23 114.8 93 59.1
Psat7g224520 Pisum sativum HOM05D007207 ORTHO05D009041 1.1e-23 114.8 94 60.6
Ah.01g015070 Amaranthus hybridus HOM05D007207 ORTHO05D009041 1.4e-23 114.4 102 56.9
HPP92_012669 Vanilla planifolia HOM05D007207 ORTHO05D009041 1.8e-23 114.0 103 57.3
MELO3C025765.2 Cucumis melo HOM05D007207 ORTHO05D009041 2.4e-23 113.6 145 45.5
ECA248G1375 Erigeron canadensis HOM05D000214 ORTHO05D000131 2.4e-23 113.6 89 62.9
CDE06G2547 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 5.3e-23 112.5 108 51.9
HanXRQChr01g0018341 Helianthus annuus HOM05D007207 ORTHO05D009041 6.9e-23 112.1 96 56.2
Thhalv10008787m.g Eutrema salsugineum HOM05D007207 ORTHO05D009041 9.0e-23 111.7 114 53.5
Lj3g0024872 Lotus japonicus HOM05D007207 ORTHO05D009041 9.0e-23 111.7 94 60.6
arahy.Tifrunner.gnm1.ann1.F7CTDZ Arachis hypogaea HOM05D007207 ORTHO05D009041 1.5e-22 110.9 93 60.2
arahy.Tifrunner.gnm1.ann1.KZS5BJ Arachis hypogaea HOM05D007207 ORTHO05D009041 1.5e-22 110.9 93 60.2
Glyma.12G069100 Glycine max HOM05D007207 ORTHO05D009041 1.5e-22 110.9 101 55.4
CARHR007760 Cardamine hirsuta HOM05D007207 ORTHO05D009041 2.0e-22 110.5 108 54.6
BcaB02g06697 Brassica carinata HOM05D007207 ORTHO05D009041 2.6e-22 110.2 98 59.2
PGR102G0648 Punica granatum HOM05D007207 ORTHO05D009041 3.4e-22 109.8 95 58.9
CDE07G0349 Ceratophyllum demersum HOM05D007207 ORTHO05D009041 4.5e-22 109.4 92 53.3
BcaC07g42510 Brassica carinata HOM05D007207 ORTHO05D009041 5.8e-22 109.0 94 57.4
A06p05070 Brassica napus HOM05D007207 ORTHO05D009041 5.8e-22 109.0 94 57.4
A09p66080 Brassica napus HOM05D007207 ORTHO05D009041 5.8e-22 109.0 102 56.9
BraA06t23713Z Brassica rapa HOM05D007207 ORTHO05D009041 5.8e-22 109.0 94 57.4
BraA09t41946Z Brassica rapa HOM05D007207 ORTHO05D009041 5.8e-22 109.0 102 56.9
TPR.G17530 Trifolium pratense HOM05D007207 ORTHO05D009041 5.8e-22 109.0 91 60.4
Carub.0001s0733 Capsella rubella HOM05D007207 ORTHO05D009041 1.0e-21 108.2 94 57.4
SalBow3G2981 Salvia bowleyana HOM05D007207 ORTHO05D009041 1.0e-21 108.2 93 54.8
Aa31LG2G9300 Aethionema arabicum HOM05D007207 ORTHO05D009041 1.3e-21 107.8 98 54.1
ClCG02G021080 Citrullus lanatus HOM05D007207 ORTHO05D009041 1.3e-21 107.8 158 40.5
BcaC05g24714 Brassica carinata HOM05D007207 ORTHO05D009041 1.7e-21 107.5 95 57.9
C05p06030 Brassica napus HOM05D007207 ORTHO05D009041 1.7e-21 107.5 95 57.9
BolC5t29362H Brassica oleracea HOM05D007207 ORTHO05D009041 1.7e-21 107.5 95 57.9
Sp1g06610 Schrenkiella parvula HOM05D007207 ORTHO05D009041 3.8e-21 106.3 94 55.3
AT1G07980 Arabidopsis thaliana HOM05D007207 ORTHO05D009041 6.5e-21 105.5 103 52.4
C08p50230 Brassica napus HOM05D007207 ORTHO05D009041 1.1e-20 104.8 102 53.9
BolC8t52552H Brassica oleracea HOM05D007207 ORTHO05D009041 1.1e-20 104.8 102 53.9
Lalb_Chr01g0004241 Lupinus albus HOM05D007207 ORTHO05D009041 1.4e-20 104.4 89 59.6
AL1G18310 Arabidopsis lyrata HOM05D007207 ORTHO05D009041 1.9e-20 104.0 94 55.3
SEGI_13018 Sequoiadendron giganteum HOM05D007207 ORTHO05D009041 3.2e-20 103.2 94 53.2
Atru.chr3.3663 Acer truncatum HOM05D007207 ORTHO05D009041 7.1e-20 102.1 126 46.8
Os03g0852300 Oryza sativa ssp. japonica HOM05D007207 ORTHO05D009041 1.6e-19 100.9 91 54.9
vmacro14446 Vaccinium macrocarpon HOM05D007207 ORTHO05D009041 3.0e-18 96.7 93 54.8
SGA_v2.0_scaffold80G25756 Striga asiatica HOM05D007207 ORTHO05D009041 1.5e-17 94.4 125 40.8
Actinidia03739 Actinidia chinensis HOM05D007207 ORTHO05D009041 1.6e-16 90.9 85 56.5
Sabra09G0008800 Salix brachista HOM05D007207 ORTHO05D009041 1.4e-15 87.8 165 37.0
AUR62024995 Chenopodium quinoa HOM05D007207 ORTHO05D009041 2.0e-14 84.0 63 66.7
CsaV3_6G021790 Cucumis sativus L. HOM05D007207 ORTHO05D009041 5.8e-14 82.4 60 63.3
Glyma.11G148000 Glycine max HOM05D007207 ORTHO05D009041 7.6e-14 82.0 102 46.1
Prupe.6G099600 Prunus persica HOM05D007207 ORTHO05D009041 1.0e-13 81.6 65 58.5
Duzib170G0223 Durio zibethinus HOM05D007207 ORTHO05D009041 1.3e-13 81.3 65 60.0
unitig_699.g19196 Utricularia gibba HOM05D007207 ORTHO05D009041 1.3e-13 81.3 71 54.9
Oeu027462.1 Olea europaea HOM05D007207 ORTHO05D009041 2.9e-13 80.1 65 53.8
PGSC0003DMG401030137 Solanum tuberosum HOM05D038777 ORTHO05D009041 5.5e-12 75.9 60 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 7.1e-12 75.5 86 41.9
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 3.5e-11 73.2 93 40.9
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 1.0e-10 71.6 93 40.9
SHI06088 Sapria himalayana HOM05D007207 ORTHO05D009041 1.3e-10 71.2 81 44.4
Zm00001eb064730 Zea mays HOM05D007207 ORTHO05D009041 1.8e-10 70.9 91 44.0
Aa31LG8G12190 Aethionema arabicum HOM05D007207 ORTHO05D009041 3.9e-10 69.7 65 52.3
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 8.7e-10 68.6 96 38.5
Migut.N02608 Erythranthe guttata HOM05D007207 ORTHO05D009041 4.8e-08 62.8 66 45.5
Psat5g095440 Pisum sativum HOM05D007500 ORTHO05D009197 7.7e-06 55.5 87 35.6


User provided reference genes

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