Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 8.0e-140 500.4 242 100.0
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 4.3e-85 318.5 192 76.0
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 6.9e-83 311.2 182 80.2
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 6.9e-83 311.2 187 75.9
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.6e-82 309.3 180 76.7
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.6e-79 300.1 180 78.3
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.6e-79 300.1 219 67.1
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.6e-79 300.1 183 74.9
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.7e-79 299.3 183 74.9
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.7e-79 299.3 182 76.4
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.7e-79 299.3 182 76.4
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 3.5e-79 298.9 187 73.8
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.0e-78 297.4 194 73.2
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.3e-78 297.0 182 76.9
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.3e-78 297.0 185 74.1
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.3e-78 296.2 177 76.3
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.3e-78 296.2 210 68.1
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 3.0e-78 295.8 180 75.0
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 3.0e-78 295.8 205 66.8
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.9e-78 295.4 191 72.3
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 5.1e-78 295.0 193 73.6
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 6.6e-78 294.7 182 74.2
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 6.6e-78 294.7 193 70.5
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.1e-77 293.9 197 72.1
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.5e-77 293.5 182 74.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.9e-77 293.1 197 71.6
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.5e-77 292.7 190 71.1
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.5e-77 292.7 198 72.2
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 2.5e-77 292.7 181 72.4
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 5.6e-77 291.6 193 70.5
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 5.6e-77 291.6 194 69.6
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 9.6e-77 290.8 194 73.7
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 1.3e-76 290.4 181 71.3
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.3e-76 290.4 198 71.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.6e-76 290.0 194 69.1
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.6e-76 290.0 192 71.4
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 2.1e-76 289.7 186 72.0
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 4.8e-76 288.5 192 68.8
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 4.8e-76 288.5 180 73.9
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 6.2e-76 288.1 182 73.1
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.4e-75 287.0 181 72.9
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.8e-75 286.6 181 71.8
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.3e-75 285.0 181 73.5
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 9.0e-75 284.3 246 61.0
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 3.4e-74 282.3 183 71.6
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 4.5e-74 282.0 194 68.0
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 4.5e-74 282.0 182 69.8
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 5.8e-74 281.6 201 65.7
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.3e-73 280.4 194 70.1
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 1.7e-73 280.0 193 68.4
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 2.9e-73 279.3 182 71.4
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 4.9e-73 278.5 202 65.8
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 8.4e-73 277.7 193 71.0
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.1e-72 277.3 193 66.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.9e-72 276.6 188 70.2
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.9e-72 276.6 182 70.9
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 3.2e-72 275.8 183 69.9
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 5.4e-72 275.0 187 66.8
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 5.4e-72 275.0 195 67.7
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 9.3e-72 274.2 181 70.7
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-71 273.9 180 71.7
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.1e-71 273.1 187 69.5
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.3e-70 269.6 184 70.1
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 6.7e-70 268.1 194 66.5
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 3.3e-69 265.8 176 65.3
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.3e-68 263.8 160 75.0
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.3e-68 263.8 260 53.5
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.8e-68 262.7 168 72.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.7e-68 262.3 185 66.5
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.4e-67 259.6 182 67.0
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.4e-67 259.6 181 63.0
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 4.0e-67 258.8 185 66.5
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 6.9e-67 258.1 189 63.5
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.5e-66 256.9 167 73.1
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 7.6e-66 254.6 209 58.9
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.2e-65 253.1 186 66.7
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 2.2e-65 253.1 186 66.7
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 2.9e-65 252.7 200 60.0
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 8.4e-65 251.1 193 62.7
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.9e-64 250.0 177 67.2
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.5e-64 249.6 181 65.2
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 3.2e-64 249.2 173 68.8
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 9.3e-64 247.7 203 61.1
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 9.3e-64 247.7 183 64.5
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.2e-63 247.3 185 64.3
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 4.6e-63 245.4 165 69.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 3.9e-62 242.3 185 62.7
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.5e-61 239.6 184 62.5
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 2.5e-61 239.6 184 62.5
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.5e-61 239.6 181 63.0
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 7.4e-61 238.0 161 65.8
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.3e-60 237.3 180 63.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.3e-60 237.3 189 61.4
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 2.1e-60 236.5 190 58.4
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.8e-60 236.1 186 62.9
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.8e-60 236.1 183 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 4.8e-60 235.3 182 61.5
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.2e-60 235.0 199 60.3
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 8.2e-60 234.6 150 72.0
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.1e-59 234.2 185 60.5
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.1e-59 234.2 185 60.5
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.8e-59 233.4 179 61.5
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.4e-59 233.0 175 63.4
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 6.9e-59 231.5 185 58.4
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.3e-57 227.3 205 53.2
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 4.6e-55 218.8 137 74.5
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.1e-55 218.4 177 60.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.1e-55 218.4 161 65.2
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 2.2e-52 209.9 164 61.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 2.2e-52 209.9 183 53.6
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 5.3e-51 205.3 133 70.7
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 9.0e-51 204.5 133 70.7
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.2e-50 204.1 175 58.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.4e-48 197.2 191 53.9
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.8e-46 190.3 133 61.7
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 7.4e-45 184.9 179 51.4
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-44 183.7 181 50.3
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.8e-44 183.0 144 61.8
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.2e-44 181.4 168 51.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.8e-43 180.3 112 72.3
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 3.4e-42 176.0 187 51.3
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-41 172.9 162 51.2
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-40 170.2 163 49.1
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 6.1e-39 165.2 182 47.8
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-36 157.1 143 51.0
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 6.3e-36 155.2 190 43.7
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 6.3e-36 155.2 182 45.6
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 9.1e-35 151.4 114 60.5
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.5e-34 149.1 181 45.3
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.0e-33 147.9 93 71.0
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.8e-33 146.0 138 52.9
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.5e-32 142.1 88 73.9
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 1.9e-24 117.1 202 35.6
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.1e-19 101.3 117 43.6
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.4e-19 100.1 95 46.3
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 6.8e-14 82.0 56 76.8
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 6.3e-12 75.5 57 64.9
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 8.3e-12 75.1 50 68.0
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.0e-09 68.2 50 64.0
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.8e-09 66.2 53 56.6
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 8.6e-09 65.1 44 65.9
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.1e-08 64.7 108 35.2
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 1.0e-06 58.2 45 62.2
Nn4g23470 Nelumbo nucifera HOM05D034550 ORTHO05D272923 1.4e-06 57.8 53 56.6


User provided reference genes

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