Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 0.0e+00 1924.4 1064 100.0
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 7.1e-140 502.7 1154 35.8
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 7.5e-65 253.4 754 32.6
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 3.4e-57 228.0 853 31.2
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 5.7e-57 227.3 801 29.8
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.1e-55 223.0 916 28.8
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 4.1e-55 221.1 947 27.8
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 3.6e-51 208.0 962 26.8
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 1.2e-49 203.0 860 29.0
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 2.9e-48 198.4 644 31.7
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 1.8e-47 195.7 846 28.8
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.5e-46 191.4 583 31.9
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 4.6e-46 191.0 714 30.8
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 2.5e-44 185.3 840 28.9
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 1.0e-42 179.9 786 28.0
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 3.7e-40 171.4 853 27.3
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 3.7e-40 171.4 551 32.1
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 4.9e-40 171.0 771 29.8
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.3e-37 162.2 773 32.9
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 3.0e-37 161.8 866 27.5
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 8.6e-37 160.2 791 31.0
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.9e-36 159.1 866 27.4
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 3.3e-36 158.3 856 26.5
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 1.2e-35 156.4 584 29.8
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 3.6e-35 154.8 505 32.3
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.1e-34 153.3 640 27.5
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 1.2e-33 149.8 823 27.0
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 3.7e-32 144.8 1011 30.5
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 1.9e-31 142.5 490 31.4
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 9.2e-31 140.2 484 31.8
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 2.1e-30 139.0 878 25.5
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 2.7e-30 138.7 608 30.4
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 2.7e-30 138.7 712 28.5
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 3.5e-30 138.3 876 28.4
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 7.8e-30 137.1 254 42.1
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.0e-29 136.7 779 27.2
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 1.3e-29 136.3 624 28.7
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 1.7e-29 136.0 593 27.8
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 5.1e-29 134.4 324 36.7
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 6.6e-29 134.0 210 44.3
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 6.6e-29 134.0 514 28.6
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 7.3e-28 130.6 513 28.5
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 9.5e-28 130.2 619 29.2
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 9.5e-28 130.2 175 48.0
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 2.8e-27 128.6 503 30.0
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.8e-27 128.6 903 28.2
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 4.0e-26 124.8 511 31.9
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 2.6e-25 122.1 580 27.9
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 3.7e-24 118.2 286 37.1
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 4.1e-23 114.8 637 27.2
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 4.1e-23 114.8 113 53.1
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 7.1e-23 114.0 640 25.6
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 2.1e-22 112.5 588 27.2
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 3.5e-22 111.7 515 29.5
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 4.6e-22 111.3 429 31.7
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 6.0e-22 110.9 561 27.3
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 7.8e-22 110.5 290 32.8
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 1.7e-21 109.4 509 31.6
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 2.3e-21 109.0 630 27.6
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 3.0e-21 108.6 185 38.9
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 8.6e-21 107.1 508 28.7
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 1.5e-20 106.3 337 35.0
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 1.5e-20 106.3 500 28.0
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 2.5e-20 105.5 250 36.8
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 5.6e-20 104.4 286 32.9
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.2e-19 103.2 517 27.3
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 3.6e-19 101.7 621 26.2
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 8.1e-19 100.5 554 28.0
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 1.1e-18 100.1 185 38.9
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 1.8e-18 99.4 663 25.3
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 1.8e-18 99.4 616 26.1
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 3.1e-18 98.6 197 39.6
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 5.2e-18 97.8 254 35.8
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 4.4e-17 94.7 749 23.9
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.4e-17 94.7 209 37.3
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 9.9e-17 93.6 95 56.8
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.3e-16 93.2 507 26.6
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 2.9e-16 92.0 507 27.2
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 1.1e-15 90.1 331 32.0
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-15 89.7 198 39.4
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 1.9e-15 89.4 491 27.1
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 2.4e-15 89.0 698 25.4
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 2.4e-15 89.0 137 46.0
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 7.1e-15 87.4 275 32.7
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 7.1e-15 87.4 275 32.7
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 2.1e-14 85.9 325 32.0
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 1.5e-12 79.7 517 26.7
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 1.5e-12 79.7 317 30.6
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 1.5e-12 79.7 246 32.5
Os11g0103100 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 1.6e-11 76.3 322 29.2
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 1.6e-11 76.3 129 44.2
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 4.8e-11 74.7 311 27.3
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 5.3e-10 71.2 221 33.5
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 2.0e-09 69.3 154 35.1
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 2.6e-09 68.9 170 32.9
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 3.4e-09 68.6 186 30.1
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 3.4e-09 68.6 85 45.9
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 9.9e-09 67.0 171 32.7
HPP92_013898 Vanilla planifolia HOM05D003265 ORTHO05D003819 9.9e-09 67.0 216 26.4
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 1.7e-08 66.2 85 41.2
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 2.2e-08 65.9 386 25.4
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.9e-08 65.5 347 26.8
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 2.9e-08 65.5 297 29.6
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 3.8e-08 65.1 86 43.0
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 3.8e-08 65.1 93 46.2
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 3.8e-08 65.1 179 31.8
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 3.8e-08 65.1 315 29.5
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 4.9e-08 64.7 374 25.7
HanXRQChr01g0027471 Helianthus annuus HOM05D003265 ORTHO05D003819 6.4e-08 64.3 167 33.5
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 8.4e-08 63.9 101 43.6
FAN14G0893 Fragaria x ananassa HOM05D000009 ORTHO05D003819 8.4e-08 63.9 308 27.9
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 8.4e-08 63.9 327 25.4
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 1.1e-07 63.5 288 27.8
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.1e-07 63.5 227 26.9
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 1.4e-07 63.2 340 26.2
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 1.4e-07 63.2 348 26.7
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.4e-07 63.2 171 28.1
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 1.9e-07 62.8 381 27.6
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 2.4e-07 62.4 286 28.0
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 3.2e-07 62.0 307 28.0
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 4.2e-07 61.6 312 29.2
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 5.4e-07 61.2 113 33.6
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 5.4e-07 61.2 90 38.9
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 5.4e-07 61.2 87 43.7
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 5.4e-07 61.2 327 26.9
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 7.1e-07 60.8 115 33.0
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 9.3e-07 60.5 72 44.4
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 1.2e-06 60.1 86 41.9
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 1.6e-06 59.7 286 29.4
ATR1159G095 Amborella trichopoda HOM05D003265 ORTHO05D003819 2.1e-06 59.3 110 36.4
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 2.1e-06 59.3 232 27.6
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 2.1e-06 59.3 319 27.0
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.7e-06 58.9 375 26.7
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 4.6e-06 58.2 390 26.4
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 4.6e-06 58.2 286 29.0
FAN09G0144 Fragaria x ananassa HOM05D003265 ORTHO05D003819 4.6e-06 58.2 320 26.6
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 6.0e-06 57.8 79 41.8
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 7.9e-06 57.4 234 31.2
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 7.9e-06 57.4 330 27.0
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 7.9e-06 57.4 330 27.0
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 7.9e-06 57.4 349 25.2
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 7.9e-06 57.4 343 27.4


User provided reference genes

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