Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.8e-129 466.1 261 100.0
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.2e-35 154.5 188 56.4
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 2.0e-32 143.7 265 44.2
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 3.5e-32 142.9 256 43.4
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 5.0e-31 139.0 266 43.2
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 9.5e-30 134.8 263 41.1
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 3.6e-29 132.9 265 41.5
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 1.0e-28 131.3 155 54.8
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.3e-28 130.2 253 42.7
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 8.9e-28 128.3 262 44.3
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 1.2e-27 127.9 267 42.3
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.7e-26 124.0 258 41.5
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 8.3e-26 121.7 267 40.8
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 8.3e-26 121.7 257 39.3
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 2.4e-25 120.2 279 38.4
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.4e-25 120.2 277 37.2
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 4.1e-25 119.4 250 37.2
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.4e-25 119.0 270 39.3
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.0e-25 118.6 259 40.2
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 2.7e-24 116.7 275 38.9
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 3.5e-24 116.3 260 39.2
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 3.5e-24 116.3 252 38.5
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 3.5e-24 116.3 259 37.1
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 4.6e-24 115.9 259 37.5
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 6.0e-24 115.5 257 37.4
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 1.0e-23 114.8 264 36.0
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 2.3e-23 113.6 256 37.9
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 5.0e-23 112.5 259 39.0
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.1e-22 111.3 248 37.9
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.9e-22 110.5 276 35.9
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.5e-22 110.2 286 37.4
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 3.3e-22 109.8 260 37.3
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 3.3e-22 109.8 271 35.1
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 2.8e-21 106.7 249 35.7
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 4.7e-21 105.9 253 32.0
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 4.7e-21 105.9 266 36.1
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.8e-20 104.0 288 34.4
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 3.1e-20 103.2 262 35.9
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 4.0e-20 102.8 226 38.1
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 6.8e-20 102.1 252 36.5
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 8.9e-20 101.7 260 33.1
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 1.2e-19 101.3 265 38.1
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 1.5e-19 100.9 267 33.3
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 2.6e-19 100.1 278 33.5
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 4.4e-19 99.4 136 48.5
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 4.4e-19 99.4 250 34.4
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 7.5e-19 98.6 258 34.9
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 9.8e-19 98.2 256 33.6
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-18 97.8 257 35.0
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 1.3e-18 97.8 277 30.7
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 1.3e-18 97.8 259 37.1
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.7e-18 97.4 257 35.4
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.9e-18 96.7 102 58.8
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 3.7e-18 96.3 136 47.8
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 4.9e-18 95.9 294 32.7
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 4.9e-18 95.9 277 31.8
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 4.9e-18 95.9 255 39.2
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 4.9e-18 95.9 90 61.1
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 8.3e-18 95.1 317 33.1
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 8.3e-18 95.1 154 43.5
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 1.1e-17 94.7 253 34.8
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.4e-17 94.4 261 35.2
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.9e-17 94.0 255 36.9
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 2.4e-17 93.6 253 32.0
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.4e-17 93.6 140 48.6
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 4.1e-17 92.8 298 32.2
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 5.4e-17 92.4 253 32.0
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 5.4e-17 92.4 284 34.5
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 9.2e-17 91.7 104 53.8
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 2.7e-16 90.1 311 31.8
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 2.7e-16 90.1 104 53.8
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 3.5e-16 89.7 281 31.3
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 4.6e-16 89.4 259 35.9
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 6.0e-16 89.0 305 29.5
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 2.3e-15 87.0 72 63.9
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 2.3e-15 87.0 259 34.7
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.0e-15 86.7 69 65.2
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 5.1e-15 85.9 258 32.9
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 5.1e-15 85.9 99 49.5
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 8.6e-15 85.1 85 56.5
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.5e-14 84.3 257 34.2
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.5e-14 84.3 126 46.8
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 1.9e-14 84.0 66 66.7
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 1.9e-14 84.0 259 30.9
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.5e-14 83.6 108 48.1
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 2.5e-14 83.6 143 44.8
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 5.6e-14 82.4 101 53.5
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 7.3e-14 82.0 255 34.1
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 2.1e-13 80.5 141 39.0
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 2.8e-13 80.1 133 39.8
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 3.6e-13 79.7 102 52.0
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 3.6e-13 79.7 236 33.1
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 4.7e-13 79.3 69 59.4
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 8.1e-13 78.6 105 47.6
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 1.4e-12 77.8 69 58.0
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.4e-12 77.8 156 41.7
TAR623G0031 Trochodendron aralioides HOM05D004973 ORTHO05D050228 1.4e-12 77.8 75 62.7
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.8e-12 77.4 161 41.6
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 3.1e-12 76.6 67 58.2
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 3.1e-12 76.6 67 58.2
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 4.0e-12 76.3 254 30.3
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 5.2e-12 75.9 157 41.4
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 5.2e-12 75.9 94 51.1
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 5.2e-12 75.9 142 40.8
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 6.8e-12 75.5 267 30.3
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 6.8e-12 75.5 101 48.5
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 1.2e-11 74.7 123 47.2
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-11 74.7 123 47.2
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 1.2e-11 74.7 123 47.2
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 1.2e-11 74.7 268 32.8
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 2.0e-11 73.9 70 58.6
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 2.0e-11 73.9 116 48.3
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 2.6e-11 73.6 67 58.2
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 2.6e-11 73.6 250 29.2
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 2.6e-11 73.6 83 56.6
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 3.4e-11 73.2 97 52.6
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 4.4e-11 72.8 117 45.3
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 5.8e-11 72.4 250 28.8
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 5.8e-11 72.4 249 28.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 7.6e-11 72.0 112 45.5
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 2.9e-10 70.1 149 40.9
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 3.8e-10 69.7 82 52.4
RhsimUnG0120800 Rhododendron simsii HOM05D004973 ORTHO05D006119 4.9e-10 69.3 212 37.3
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 6.4e-10 68.9 82 51.2
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 1.4e-09 67.8 255 30.6
Nitab4.5_0007045g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.1e-09 66.2 217 32.3
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 1.6e-08 64.3 263 29.7
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 2.1e-08 63.9 257 31.1
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 3.5e-08 63.2 257 30.4
CAN.G867.2 Capsicum annuum HOM05D004973 ORTHO05D006119 4.6e-08 62.8 218 31.2
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 4.6e-08 62.8 117 41.9
PSO713G0008 Papaver somniferum HOM05D004973 ORTHO05D050228 4.6e-08 62.8 71 54.9
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 4.6e-08 62.8 38 81.6
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 1.7e-07 60.8 65 47.7
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 3.0e-07 60.1 88 47.7
Glyma.13G135200 Glycine max HOM05D004973 ORTHO05D006119 3.9e-07 59.7 231 32.0
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 5.1e-07 59.3 65 46.2
HPP92_014323 Vanilla planifolia HOM05D053846 ORTHO05D051553 8.6e-07 58.5 239 30.1
HPP92_014329 Vanilla planifolia HOM05D053846 ORTHO05D051553 2.5e-06 57.0 247 30.8
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 9.6e-06 55.1 249 27.7


User provided reference genes

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