Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.2e-123 446.4 218 100.0
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 6.6e-85 317.8 228 68.0
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 6.8e-82 307.8 223 67.3
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 8.9e-74 280.8 218 61.5
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 2.6e-73 279.3 228 60.1
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.4e-73 278.9 227 58.6
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 4.4e-73 278.5 220 61.4
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.2e-72 276.2 225 56.4
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 3.8e-72 275.4 254 53.5
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.4e-71 273.5 227 58.1
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 7.1e-71 271.2 202 64.4
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.2e-70 270.4 223 57.4
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 5.1e-69 265.0 188 63.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 6.6e-69 264.6 226 57.1
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.5e-68 263.5 223 56.1
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.9e-68 263.1 219 58.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.5e-68 262.7 216 58.3
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.5e-68 262.7 228 55.7
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 9.6e-68 260.8 210 59.0
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.6e-67 260.0 227 56.4
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.6e-67 260.0 226 56.6
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 3.6e-67 258.8 225 55.1
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 6.2e-67 258.1 218 56.4
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.1e-66 257.3 223 55.2
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.1e-66 257.3 225 54.2
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.8e-66 256.5 214 55.6
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 2.4e-66 256.1 224 53.6
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.0e-66 255.4 210 59.0
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 6.9e-66 254.6 198 60.6
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 9.0e-66 254.2 216 56.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.2e-65 253.8 194 62.9
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.5e-65 253.4 233 51.9
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.0e-65 253.1 225 53.8
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 3.4e-65 252.3 216 55.1
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 5.8e-65 251.5 213 55.9
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 5.8e-65 251.5 211 58.3
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 5.8e-65 251.5 226 57.5
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 7.6e-65 251.1 225 53.8
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 7.6e-65 251.1 225 55.1
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 7.6e-65 251.1 204 56.9
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 9.9e-65 250.8 216 57.4
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 9.9e-65 250.8 207 55.6
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.9e-65 250.8 218 53.7
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.2e-64 249.6 213 55.9
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.9e-64 249.2 227 53.7
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.4e-63 246.1 218 54.6
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 2.4e-63 246.1 227 53.3
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 3.2e-63 245.7 213 54.5
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 3.2e-63 245.7 209 57.4
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 4.2e-63 245.4 224 53.1
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.4e-63 245.0 224 52.2
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 7.1e-63 244.6 195 58.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 1.2e-62 243.8 212 55.2
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.2e-62 243.8 227 52.4
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.6e-62 243.4 213 54.0
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.1e-62 243.0 223 54.3
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 3.5e-62 242.3 199 60.8
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 6.0e-62 241.5 219 52.5
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 7.9e-62 241.1 214 54.7
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-61 240.4 223 53.4
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.3e-61 240.4 202 56.4
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.8e-61 240.0 221 52.5
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.3e-61 239.6 204 55.4
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 3.0e-61 239.2 215 51.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.1e-60 237.3 218 52.3
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.1e-60 237.3 206 54.4
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.5e-60 236.9 214 53.3
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.5e-60 236.1 234 48.7
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 2.5e-60 236.1 215 53.5
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.3e-60 235.3 214 52.8
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 7.4e-60 234.6 213 53.1
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 7.4e-60 234.6 220 51.4
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 9.6e-60 234.2 219 53.0
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.3e-59 233.8 235 49.4
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 3.6e-59 232.3 258 45.0
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 4.8e-59 231.9 211 53.1
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 4.8e-59 231.9 214 55.1
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 6.2e-59 231.5 206 54.4
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 8.1e-59 231.1 226 49.1
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 8.1e-59 231.1 211 55.5
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.8e-58 229.9 219 53.4
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.4e-58 229.6 230 48.3
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.4e-58 229.6 229 52.4
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.0e-58 228.8 219 52.1
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 4.0e-58 228.8 230 49.6
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.2e-57 227.3 219 52.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 2.0e-57 226.5 231 49.8
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.0e-57 226.5 219 51.1
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.0e-57 226.5 233 47.2
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.6e-57 226.1 213 53.1
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 3.4e-57 225.7 219 52.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 3.4e-57 225.7 218 49.1
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 4.5e-57 225.3 226 50.9
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 5.8e-57 224.9 219 52.1
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 7.6e-57 224.6 219 51.6
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.3e-56 223.8 219 52.5
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-56 223.8 230 47.8
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.7e-56 223.4 228 49.6
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.7e-56 223.4 229 52.0
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 4.9e-56 221.9 219 52.1
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 4.9e-56 221.9 203 52.2
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 6.4e-56 221.5 223 48.9
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 2.4e-55 219.5 193 55.4
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.2e-55 219.2 226 50.4
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.2e-54 217.2 231 47.2
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.1e-54 216.5 246 44.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 2.1e-54 216.5 219 47.5
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.0e-53 214.2 211 46.4
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 1.0e-53 214.2 262 41.2
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.3e-53 213.8 185 56.2
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.3e-53 213.8 230 48.7
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 6.7e-53 211.5 227 48.5
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 6.7e-53 211.5 246 43.9
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 8.7e-53 211.1 214 48.6
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.1e-52 210.7 147 63.9
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.1e-52 210.7 227 48.0
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.9e-52 209.9 211 50.2
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.3e-52 208.8 186 50.0
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.3e-51 207.2 227 48.5
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.6e-51 206.8 227 47.6
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.6e-51 206.8 227 47.6
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.6e-51 206.8 214 48.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.7e-51 205.7 216 45.8
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.4e-50 203.8 202 48.5
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 3.1e-50 202.6 220 43.6
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 4.0e-50 202.2 207 45.9
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 5.3e-50 201.8 204 49.0
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 4.9e-48 195.3 136 63.2
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 6.5e-48 194.9 183 45.9
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 8.4e-48 194.5 242 41.3
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.1e-47 194.1 209 45.9
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.1e-47 194.1 216 46.8
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.9e-47 193.4 182 51.6
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 2.5e-47 193.0 225 41.8
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.2e-47 192.6 209 45.5
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.2e-47 192.2 207 44.0
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 5.5e-47 191.8 200 51.0
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 1.2e-46 190.7 199 48.2
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.1e-46 189.9 221 44.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 1.8e-45 186.8 221 43.9
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 5.1e-45 185.3 221 44.3
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 5.1e-45 185.3 202 50.5
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 6.7e-45 184.9 192 51.6
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.3e-44 182.6 223 46.6
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 3.3e-44 182.6 223 46.6
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 6.3e-43 178.3 191 47.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.1e-42 177.6 141 58.9
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.8e-42 176.8 220 43.6
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 9.0e-42 174.5 220 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 2.0e-41 173.3 218 40.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.9e-39 166.8 210 43.8
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.6e-38 163.7 244 38.1
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.1e-34 147.9 139 51.8
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 8.5e-32 141.4 144 49.3
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 4.2e-31 139.0 164 43.9
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.1e-30 136.7 206 36.4
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 7.9e-30 134.8 141 48.9
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.0e-29 134.4 231 35.1
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.4e-29 134.0 181 43.6
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 8.8e-29 131.3 151 47.0
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.3e-24 117.5 144 41.7
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.8e-24 115.9 144 39.6
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 9.1e-18 94.7 159 35.2
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 9.1e-18 94.7 86 52.3
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 3.8e-16 89.4 107 42.1
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 5.0e-16 89.0 86 51.2
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 2.7e-14 83.2 67 56.7
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.1e-14 82.0 61 54.1
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 2.2e-11 73.6 64 54.7
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 2.8e-11 73.2 103 38.8
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 4.8e-11 72.4 103 38.8
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.1e-10 71.2 90 40.0
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 7.0e-10 68.6 72 47.2
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.7e-08 63.9 58 50.0
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 5.0e-08 62.4 60 46.7


User provided reference genes

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