Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2548.1 1269 100.0
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2182.1 1249 85.6
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2176.7 1267 84.6
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1249 85.3
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2174.1 1267 84.7
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2168.7 1268 85.0
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2167.5 1249 85.1
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2163.3 1249 85.7
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2161.3 1267 84.1
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2153.3 1249 84.7
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2153.3 1249 84.4
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2152.1 1249 84.9
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2150.6 1249 85.1
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2145.5 1268 83.6
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2142.1 1249 84.1
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2141.7 1250 84.6
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2139.8 1255 84.3
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2139.4 1244 84.6
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2137.8 1249 84.1
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2137.1 1249 84.1
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2136.3 1249 83.9
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2135.1 1268 83.2
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2134.4 1244 84.3
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2133.2 1250 84.2
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2133.2 1249 84.0
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2132.1 1249 83.6
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 2132.1 1250 84.0
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2131.7 1249 83.7
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2131.7 1249 83.4
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2129.4 1267 82.4
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2126.3 1249 84.0
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2122.8 1250 82.9
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2120.5 1211 86.1
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2119.4 1267 81.4
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2119.0 1243 83.4
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2117.4 1249 82.7
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2117.4 1249 84.2
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2117.0 1249 84.3
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2115.9 1249 82.9
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2115.5 1250 83.2
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2115.1 1249 83.3
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2114.7 1249 84.2
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2113.6 1249 84.1
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2112.0 1249 83.0
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2109.7 1249 82.3
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2109.7 1267 81.9
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2109.3 1267 81.3
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2109.3 1252 82.4
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2109.3 1249 82.5
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2107.8 1267 81.5
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2107.8 1249 82.9
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2105.9 1249 83.7
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2105.9 1249 82.4
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2105.1 1267 80.8
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2105.1 1267 81.5
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2102.8 1267 80.8
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2102.8 1267 80.9
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2102.8 1249 82.5
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2101.2 1267 80.7
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2100.5 1267 80.7
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2100.5 1267 81.1
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2099.7 1249 82.1
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2098.2 1267 80.7
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2097.0 1267 81.9
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2096.2 1250 82.2
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2092.8 1250 81.8
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2092.4 1249 82.1
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2092.0 1249 82.7
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2091.2 1249 82.1
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2089.3 1252 82.4
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2086.6 1249 82.8
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2084.7 1250 82.1
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2084.7 1249 81.6
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2083.9 1252 82.3
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2080.8 1249 81.4
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2080.1 1249 83.1
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2074.7 1269 81.1
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2073.9 1267 79.9
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2070.4 1249 81.2
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2065.8 1249 81.3
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2057.3 1268 80.2
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2051.9 1249 80.5
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2051.2 1249 81.0
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2036.5 1249 80.5
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2034.6 1268 79.9
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2031.9 1268 78.5
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2030.4 1250 79.6
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2021.5 1249 80.0
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2015.0 1268 78.5
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2010.7 1273 79.0
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 1998.8 1251 77.6
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 1992.6 1249 79.0
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1991.1 1164 84.6
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 1961.0 1249 77.8
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1914.4 1249 75.5
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1895.9 1256 73.9
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1875.9 1251 74.3
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1852.8 1266 72.4
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1836.6 1251 73.1
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1817.0 1092 82.0
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1812.3 1171 76.9
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1812.3 1255 71.8
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1781.9 1066 80.8
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1779.6 1130 79.0
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1717.2 1249 70.2
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1699.5 1250 69.5
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1582.8 942 80.9
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1523.1 1301 61.4
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1502.6 1026 72.2
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1340.5 792 81.6
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1310.0 1272 55.0
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1299.3 1252 58.4
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1293.5 1371 52.6
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1274.2 725 85.9
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1164.4 1042 60.8
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1140.9 812 72.4
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.9e-265 919.5 505 89.9
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 6.2e-252 875.2 1224 40.9
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 4.9e-249 865.5 549 78.3
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 7.0e-227 792.0 651 62.4
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 3.1e-203 713.4 506 71.7
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 3.5e-202 709.9 455 79.6
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.6e-191 674.5 392 86.7
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 6.1e-130 469.9 358 67.6
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 3.8e-108 397.5 292 70.5
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 8.0e-106 389.8 272 73.5
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 1.1e-78 299.7 483 41.2
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 2.0e-69 268.9 173 75.7
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 6.6e-68 263.8 173 75.1
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 2.5e-67 261.9 173 74.6
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 3.7e-63 248.1 138 89.1
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 9.5e-59 233.4 234 55.6
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 2.4e-41 175.6 152 65.1
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 7.6e-40 170.6 91 87.9
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 1.4e-38 166.4 93 83.9
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 2.7e-37 162.2 182 53.8
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.6e-29 136.3 104 64.4
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 2.2e-23 115.9 77 68.8


User provided reference genes

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