Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12769 Nelumbo nucifera HOM05D003525 ORTHO05D004578 4.1e-15 83.6 43 100.0
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 7.3e-12 72.8 42 88.1
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 2.1e-11 71.2 42 83.3
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 6.2e-11 69.7 42 81.0
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 1.4e-10 68.6 42 81.0
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 1.8e-10 68.2 42 78.6
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 1.8e-10 68.2 42 78.6
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 3.1e-10 67.4 42 78.6
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 3.1e-10 67.4 42 76.2
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 3.1e-10 67.4 42 78.6
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 4.0e-10 67.0 42 78.6
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 5.2e-10 66.6 42 73.8
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 8.9e-10 65.9 42 76.2
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 8.9e-10 65.9 42 76.2
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 1.2e-09 65.5 42 76.2
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 1.2e-09 65.5 42 73.8
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 1.2e-09 65.5 42 76.2
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 2.0e-09 64.7 42 76.2
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 2.0e-09 64.7 42 76.2
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 2.0e-09 64.7 42 76.2
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 2.0e-09 64.7 42 73.8
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 2.6e-09 64.3 42 73.8
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 2.6e-09 64.3 42 76.2
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 2.6e-09 64.3 42 73.8
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 2.6e-09 64.3 42 73.8
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 2.6e-09 64.3 42 73.8
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 2.6e-09 64.3 42 78.6
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 3.4e-09 63.9 42 73.8
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 3.4e-09 63.9 39 79.5
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 4.4e-09 63.5 42 76.2
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 4.4e-09 63.5 42 71.4
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 5.8e-09 63.2 42 71.4
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 5.8e-09 63.2 42 78.6
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 5.8e-09 63.2 42 73.8
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 7.6e-09 62.8 42 73.8
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.3e-08 62.0 42 71.4
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 1.3e-08 62.0 42 76.2
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 1.7e-08 61.6 42 71.4
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 1.7e-08 61.6 42 73.8
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 2.2e-08 61.2 43 76.7
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 2.2e-08 61.2 42 69.0
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 2.2e-08 61.2 42 71.4
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 2.2e-08 61.2 42 73.8
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 2.9e-08 60.8 42 71.4
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 2.9e-08 60.8 42 71.4
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 2.9e-08 60.8 42 71.4
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 3.7e-08 60.5 42 71.4
Cpa.g.sc62.144 Carica papaya HOM05D003525 ORTHO05D004578 3.7e-08 60.5 42 76.2
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 3.7e-08 60.5 42 73.8
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 3.7e-08 60.5 42 69.0
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 4.9e-08 60.1 42 71.4
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 4.9e-08 60.1 42 66.7
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 4.9e-08 60.1 42 73.8
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 6.4e-08 59.7 42 69.0
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 6.4e-08 59.7 42 71.4
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 8.4e-08 59.3 42 69.0
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 8.4e-08 59.3 42 69.0
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 8.4e-08 59.3 42 69.0
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 8.4e-08 59.3 42 73.8
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 8.4e-08 59.3 41 73.2
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 8.4e-08 59.3 42 71.4
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 8.4e-08 59.3 42 69.0
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 8.4e-08 59.3 39 76.9
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 1.1e-07 58.9 42 69.0
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 1.1e-07 58.9 39 74.4
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 1.1e-07 58.9 43 69.8
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.4e-07 58.5 42 69.0
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 1.4e-07 58.5 42 69.0
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 1.4e-07 58.5 42 71.4
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 1.4e-07 58.5 42 69.0
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 1.4e-07 58.5 42 69.0
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 1.9e-07 58.2 42 64.3
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.9e-07 58.2 42 64.3
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.9e-07 58.2 42 64.3
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 1.9e-07 58.2 42 69.0
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 1.9e-07 58.2 42 66.7
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 2.4e-07 57.8 42 66.7
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 2.4e-07 57.8 42 66.7
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 2.4e-07 57.8 42 71.4
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 3.2e-07 57.4 42 69.0
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 3.2e-07 57.4 42 64.3
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 3.2e-07 57.4 39 74.4
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 4.1e-07 57.0 42 66.7
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 4.1e-07 57.0 42 64.3
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 4.1e-07 57.0 42 69.0
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 4.1e-07 57.0 42 71.4
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 5.4e-07 56.6 42 66.7
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 5.4e-07 56.6 42 69.0
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 5.4e-07 56.6 42 64.3
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 5.4e-07 56.6 42 66.7
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 7.1e-07 56.2 42 66.7
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 7.1e-07 56.2 42 66.7
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 7.1e-07 56.2 42 66.7
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 7.1e-07 56.2 42 64.3
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 7.1e-07 56.2 42 61.9
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 7.1e-07 56.2 42 66.7
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 9.2e-07 55.8 42 64.3
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 9.2e-07 55.8 42 64.3
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 9.2e-07 55.8 39 64.1
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 9.2e-07 55.8 42 66.7
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.2e-06 55.5 42 61.9
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 1.2e-06 55.5 42 69.0
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 1.2e-06 55.5 42 69.0
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 1.6e-06 55.1 42 64.3
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 1.6e-06 55.1 42 66.7
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 1.6e-06 55.1 42 66.7
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.6e-06 55.1 42 66.7
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.1e-06 54.7 42 61.9
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 2.7e-06 54.3 42 61.9
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 3.5e-06 53.9 42 61.9
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 3.5e-06 53.9 42 66.7
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 6.0e-06 53.1 42 66.7
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 6.0e-06 53.1 42 61.9
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 6.0e-06 53.1 42 64.3
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 7.8e-06 52.8 42 64.3
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 7.8e-06 52.8 42 61.9
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 7.8e-06 52.8 42 61.9


User provided reference genes

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