Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 3.1e-96 355.1 182 100.0
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.5e-61 239.2 149 80.5
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.6e-60 236.5 172 74.4
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.8e-59 233.0 140 82.9
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 3.0e-59 232.3 149 78.5
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.3e-57 226.9 172 69.8
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.7e-57 226.5 122 91.0
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.7e-57 226.5 145 77.9
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 2.9e-57 225.7 122 90.2
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 4.9e-57 224.9 149 77.2
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.1e-56 223.8 149 73.8
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 9.2e-56 220.7 172 67.4
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 9.2e-56 220.7 126 85.7
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 9.2e-56 220.7 172 69.8
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.6e-55 219.9 126 85.7
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.7e-55 219.2 126 85.7
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 7.8e-55 217.6 149 71.8
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 1.0e-54 217.2 122 86.9
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 1.7e-54 216.5 172 65.7
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.7e-54 216.5 140 78.6
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 3.9e-54 215.3 132 80.3
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 6.6e-54 214.5 122 85.2
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 8.6e-54 214.2 139 76.3
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 1.9e-53 213.0 142 73.2
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 2.5e-53 212.6 135 80.7
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 4.3e-53 211.8 142 74.6
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 4.3e-53 211.8 139 75.5
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 5.6e-53 211.5 139 74.8
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 7.3e-53 211.1 135 77.0
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 9.5e-53 210.7 113 90.3
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.2e-52 210.3 127 81.9
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 1.6e-52 209.9 122 83.6
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 2.8e-52 209.1 143 74.8
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 3.6e-52 208.8 138 73.9
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.6e-52 208.8 134 78.4
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 4.7e-52 208.4 172 65.7
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 4.7e-52 208.4 122 82.8
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 8.0e-52 207.6 132 76.5
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 1.0e-51 207.2 132 76.5
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.3e-51 206.1 134 77.6
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.3e-51 206.1 136 77.2
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 2.3e-51 206.1 123 78.9
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 3.1e-51 205.7 132 76.5
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 3.1e-51 205.7 138 73.9
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 5.2e-51 204.9 123 82.9
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 8.9e-51 204.1 123 78.9
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 8.9e-51 204.1 119 84.0
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 1.2e-50 203.8 139 72.7
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.0e-50 203.0 121 81.8
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 2.6e-50 202.6 142 71.1
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 4.4e-50 201.8 148 68.2
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 4.4e-50 201.8 130 77.7
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 5.8e-50 201.4 123 80.5
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 5.8e-50 201.4 140 71.4
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 7.5e-50 201.1 152 67.1
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 7.5e-50 201.1 135 74.1
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 9.8e-50 200.7 116 80.2
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 1.7e-49 199.9 119 80.7
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.7e-49 199.9 140 71.4
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 2.9e-49 199.1 145 69.7
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.9e-49 199.1 118 81.4
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.9e-49 199.1 118 81.4
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 3.7e-49 198.7 141 70.2
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 8.3e-49 197.6 121 78.5
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 8.3e-49 197.6 133 74.4
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 8.3e-49 197.6 172 62.8
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 1.1e-48 197.2 127 74.0
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 2.4e-48 196.1 134 74.6
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 2.4e-48 196.1 122 79.5
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.4e-48 196.1 118 80.5
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 2.4e-48 196.1 118 80.5
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 5.4e-48 194.9 111 82.9
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 5.4e-48 194.9 118 79.7
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 7.0e-48 194.5 116 78.4
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 7.0e-48 194.5 134 73.1
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 7.0e-48 194.5 127 72.4
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 9.2e-48 194.1 143 70.6
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.2e-47 193.7 122 78.7
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.2e-47 193.7 116 78.4
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 4.6e-47 191.8 121 75.2
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 2.3e-46 189.5 104 85.6
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.3e-46 189.5 134 70.1
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 3.9e-46 188.7 121 75.2
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 5.0e-46 188.3 134 69.4
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 8.6e-46 187.6 122 74.6
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 1.1e-45 187.2 122 78.7
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.9e-45 186.4 132 71.2
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 2.5e-45 186.0 134 70.1
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 3.3e-45 185.7 134 70.1
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 7.3e-45 184.5 134 68.7
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 9.5e-45 184.1 122 73.8
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.2e-44 183.7 109 78.9
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 2.1e-44 183.0 104 80.8
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 2.1e-44 183.0 104 80.8
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 2.1e-44 183.0 104 80.8
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 2.8e-44 182.6 104 80.8
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 2.8e-44 182.6 104 80.8
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 2.8e-44 182.6 104 80.8
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 3.6e-44 182.2 104 80.8
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 3.6e-44 182.2 104 80.8
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 3.6e-44 182.2 110 75.5
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 6.2e-44 181.4 103 80.6
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 6.2e-44 181.4 103 80.6
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 6.2e-44 181.4 104 79.8
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 6.2e-44 181.4 134 69.4
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 8.1e-44 181.0 104 79.8
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 8.1e-44 181.0 149 66.4
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 1.1e-43 180.6 112 77.7
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 1.8e-43 179.9 133 70.7
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 1.8e-43 179.9 174 60.9
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 2.3e-43 179.5 104 79.8
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 2.3e-43 179.5 104 79.8
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 2.3e-43 179.5 104 79.8
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.3e-43 179.5 103 81.6
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 4.0e-43 178.7 174 60.3
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 5.2e-43 178.3 126 69.8
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 8.9e-43 177.6 174 60.3
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.2e-42 177.2 151 64.2
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 2.0e-42 176.4 151 64.2
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 5.8e-42 174.9 138 64.5
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 7.5e-42 174.5 108 76.9
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 2.9e-41 172.6 138 63.8
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.9e-41 172.6 122 70.5
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 4.9e-41 171.8 174 59.8
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 8.3e-41 171.0 132 65.2
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 2.7e-39 166.0 122 67.2
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 2.3e-38 162.9 106 75.5
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.4e-32 143.7 73 89.0
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 2.1e-31 139.8 101 64.4
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 4.0e-27 125.6 112 59.8
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 4.0e-27 125.6 112 59.8
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 6.4e-25 118.2 72 76.4
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.2e-23 114.0 104 58.7
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.7e-23 112.8 58 87.9
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 3.0e-22 109.4 87 62.1
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 3.3e-21 105.9 78 57.7
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 7.3e-21 104.8 78 60.3
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.3e-20 104.0 84 57.1
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.6e-20 103.6 93 52.7
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 1.4e-19 100.5 96 57.3
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 2.1e-07 60.1 34 76.5
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 3.5e-07 59.3 32 78.1
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.5e-07 59.3 49 53.1
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 2.3e-06 56.6 49 53.1


User provided reference genes

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