Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.7e-194 681.8 336 100.0
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.2e-156 555.8 336 82.7
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.2e-156 555.8 336 82.7
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.0e-117 426.4 344 64.8
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 7.2e-115 417.9 343 64.7
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 2.4e-110 402.9 345 59.4
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.6e-109 400.2 345 59.7
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-107 392.9 341 58.4
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 2.8e-106 389.4 347 58.8
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 1.8e-105 386.7 345 55.7
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.7e-101 372.9 345 57.1
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.3e-100 370.5 347 56.5
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 9.5e-99 364.4 344 54.7
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 1.2e-98 364.0 345 54.2
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.8e-98 362.8 342 54.7
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 3.6e-98 362.5 344 56.7
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 6.1e-98 361.7 345 54.2
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.0e-97 360.9 345 54.5
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.4e-97 360.5 346 54.9
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.8e-97 360.1 347 57.1
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.2e-97 358.6 345 54.2
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.2e-96 357.5 346 53.2
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.5e-96 357.1 346 53.2
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.6e-96 356.3 346 53.2
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 5.8e-96 355.1 345 53.6
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 7.5e-96 354.8 345 53.6
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 6.4e-95 351.7 346 54.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.4e-94 350.5 343 53.1
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 3.2e-94 349.4 337 54.9
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 1.6e-93 347.1 352 52.3
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 3.9e-92 342.4 337 52.8
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 5.0e-92 342.0 341 52.2
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.5e-91 339.7 345 54.5
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.5e-91 339.7 344 54.1
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 3.3e-91 339.3 343 52.5
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.3e-91 339.3 344 52.0
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 7.3e-91 338.2 342 52.3
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.2e-90 337.4 343 51.6
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.1e-90 336.7 344 50.9
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 2.8e-90 336.3 344 53.2
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.4e-89 334.0 345 49.9
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.8e-89 333.6 345 53.6
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.1e-89 332.8 345 49.9
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 4.0e-89 332.4 341 51.6
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 6.8e-89 331.6 357 51.8
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 7.5e-88 328.2 341 51.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.3e-87 327.4 343 51.9
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.3e-87 327.4 342 52.6
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.7e-87 327.0 347 53.0
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.7e-87 327.0 348 49.4
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.9e-87 326.2 344 52.3
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.9e-87 326.2 343 51.3
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 8.3e-87 324.7 345 50.7
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-86 324.3 332 52.1
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.4e-86 323.9 294 56.5
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.2e-85 320.9 344 48.8
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.1e-85 320.1 345 48.4
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 2.1e-85 320.1 347 49.3
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 8.6e-84 314.7 342 50.0
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.5e-83 313.9 347 48.7
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 7.3e-83 311.6 325 50.8
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.6e-82 310.5 346 48.0
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 4.7e-82 308.9 343 48.7
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 4.7e-82 308.9 343 49.3
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 8.1e-82 308.1 347 48.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.1e-81 307.8 323 51.4
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.8e-81 307.0 347 47.3
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.8e-81 307.0 343 48.4
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.3e-81 306.6 348 47.1
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 3.1e-81 306.2 347 47.0
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 6.8e-81 305.1 347 47.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 6.8e-81 305.1 338 48.2
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.2e-80 304.3 342 47.7
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 4.4e-80 302.4 344 48.8
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 5.8e-80 302.0 331 48.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 7.5e-80 301.6 342 47.1
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 7.5e-80 301.6 342 46.8
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 9.9e-80 301.2 310 52.3
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.7e-79 300.4 348 47.1
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.9e-79 299.7 338 47.6
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.9e-79 298.9 337 47.8
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 8.3e-79 298.1 344 47.4
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.4e-78 297.4 342 46.2
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.2e-78 296.2 339 49.0
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 7.1e-78 295.0 342 47.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.6e-77 293.9 340 46.5
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.6e-77 292.4 345 47.0
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.0e-76 291.2 344 45.6
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 5.1e-76 288.9 294 51.0
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.9e-75 287.0 346 48.0
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 4.3e-75 285.8 281 50.9
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 9.5e-75 284.6 342 44.2
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.2e-74 284.3 343 45.2
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 4.7e-74 282.3 308 48.7
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 8.1e-74 281.6 343 44.9
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 8.1e-74 281.6 332 45.8
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.1e-73 281.2 296 50.3
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.4e-73 280.0 318 48.1
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 8.9e-73 278.1 318 48.4
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.0e-72 276.9 341 46.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.6e-72 276.6 326 47.9
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 7.6e-72 275.0 341 45.2
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 7.6e-72 275.0 260 56.2
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.7e-71 273.9 308 48.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 2.9e-71 273.1 329 45.0
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 3.8e-71 272.7 340 43.8
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 6.4e-71 271.9 346 44.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 6.4e-71 271.9 336 44.3
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.4e-70 270.8 347 44.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.9e-70 270.4 342 43.3
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.4e-70 270.0 343 43.7
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 9.2e-70 268.1 342 44.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.1e-69 266.9 338 45.3
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.1e-69 266.9 346 43.4
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 4.6e-69 265.8 345 42.9
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 6.6e-68 261.9 331 45.9
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 6.6e-68 261.9 343 42.6
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.5e-67 260.8 294 47.6
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 3.3e-67 259.6 346 43.9
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.3e-67 259.6 347 42.1
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.6e-66 257.3 343 42.6
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 8.1e-66 255.0 341 44.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-65 254.6 346 41.6
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.1e-65 254.6 346 43.1
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.1e-65 254.6 344 43.0
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 3.1e-65 253.1 341 43.4
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.7e-63 247.3 343 42.6
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 4.9e-63 245.7 348 40.2
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 5.1e-60 235.7 346 41.3
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 8.7e-60 235.0 335 40.9
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.9e-59 233.8 281 44.1
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.9e-54 217.2 200 53.5
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 9.3e-54 214.9 329 38.3
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.6e-53 214.2 333 39.9
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-49 201.4 137 68.6
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 4.0e-49 199.5 309 40.5
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.4e-48 196.4 340 37.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.9e-46 190.7 137 66.4
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.2e-45 188.0 129 67.4
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 6.7e-44 182.2 212 42.0
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.9e-43 180.6 237 41.4
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 5.0e-39 166.0 282 37.6
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.6e-37 161.0 341 33.7
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.2e-34 150.6 324 34.3
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 7.9e-29 132.1 103 60.2
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.0e-20 105.1 135 43.7
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.3e-15 88.2 202 30.2
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 2.2e-15 87.4 203 30.0
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.4e-09 67.4 42 73.8


User provided reference genes

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