Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12559 Nelumbo nucifera HOM05D002808 ORTHO05D003135 1.5e-122 443.0 246 100.0
Nn2g14250 Nelumbo nucifera HOM05D002808 ORTHO05D003135 8.9e-38 161.4 236 52.1
Nn8g40701 Nelumbo nucifera HOM05D002808 ORTHO05D273589 1.7e-25 120.6 169 49.7
TAR627G0014 Trochodendron aralioides HOM05D002808 ORTHO05D003135 3.5e-18 96.3 67 74.6
TAR626G1282 Trochodendron aralioides HOM05D002808 ORTHO05D003135 6.7e-17 92.0 216 37.5
CSS0014200 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 4.3e-16 89.4 66 69.7
TAR626G1215 Trochodendron aralioides HOM05D002808 ORTHO05D003135 4.3e-16 89.4 216 37.0
GSVIVG01030542001 Vitis vinifera HOM05D002808 ORTHO05D003135 1.3e-15 87.8 65 70.8
Lj8P114G28 Lonicera japonica HOM05D002808 ORTHO05D003135 3.6e-15 86.3 67 67.2
Dinv40529 Davidia involucrata HOM05D002808 ORTHO05D003135 4.8e-15 85.9 67 71.6
Duzib192G0379 Durio zibethinus HOM05D002808 ORTHO05D003135 6.2e-15 85.5 66 66.7
Duzib235G0556 Durio zibethinus HOM05D002808 ORTHO05D003135 8.1e-15 85.1 66 65.2
PSO541G4209 Papaver somniferum HOM05D002808 ORTHO05D003135 8.1e-15 85.1 68 69.1
PSO675G4664 Papaver somniferum HOM05D002808 ORTHO05D003135 8.1e-15 85.1 68 69.1
QL08p038142 Quercus lobata HOM05D002808 ORTHO05D003135 8.1e-15 85.1 100 59.0
Thecc.06G193100 Theobroma cacao HOM05D002808 ORTHO05D003135 1.4e-14 84.3 70 62.9
Haze_06527 Corylus avellana HOM05D002808 ORTHO05D003135 4.0e-14 82.8 67 67.2
CsaV3_1G011990 Cucumis sativus L. HOM05D002808 ORTHO05D003135 4.0e-14 82.8 66 65.2
MBI02_g23398_MAGBIO Magnolia biondii HOM05D002808 ORTHO05D003135 4.0e-14 82.8 69 63.8
CiPaw.09G054500 Carya illinoinensis HOM05D002808 ORTHO05D003135 6.9e-14 82.0 70 67.1
CSS0000867 Camellia sinensis var. sinensis HOM05D002808 ORTHO05D003135 1.2e-13 81.3 96 59.4
Dinv07522 Davidia involucrata HOM05D002808 ORTHO05D003135 1.2e-13 81.3 67 68.7
MD10G1299500 Malus domestica HOM05D002808 ORTHO05D003135 1.2e-13 81.3 70 65.7
Rhsim04G0067100 Rhododendron simsii HOM05D002808 ORTHO05D003135 1.2e-13 81.3 66 63.6
Migut.M01173 Erythranthe guttata HOM05D002808 ORTHO05D003135 1.5e-13 80.9 65 69.2
COL.COLO4_22781 Corchorus olitorius HOM05D002808 ORTHO05D003135 2.0e-13 80.5 67 62.7
Hma1.2p1_0835F.1_g225910 Hydrangea macrophylla HOM05D002808 ORTHO05D003135 2.6e-13 80.1 62 71.0
Oeu038236.1 Olea europaea HOM05D002808 ORTHO05D003135 2.6e-13 80.1 66 68.2
QL05p038939 Quercus lobata HOM05D002808 ORTHO05D003135 2.6e-13 80.1 67 65.7
Prupe.4G041300 Prunus persica HOM05D002808 ORTHO05D003135 3.4e-13 79.7 66 68.2
ClCG03G005720 Citrullus lanatus HOM05D002808 ORTHO05D003135 4.5e-13 79.3 66 63.6
Lalb_Chr09g0327531 Lupinus albus HOM05D002808 ORTHO05D003135 4.5e-13 79.3 62 69.4
Nitab4.5_0001833g0100 Nicotiana tabacum HOM05D002808 ORTHO05D003135 4.5e-13 79.3 66 66.7
Oeu005069.1 Olea europaea HOM05D002808 ORTHO05D003135 4.5e-13 79.3 67 65.7
SGA_v2.0_scaffold22G09764 Striga asiatica HOM05D002808 ORTHO05D003135 4.5e-13 79.3 66 69.7
VMungo0251G2678 Vigna mungo HOM05D002808 ORTHO05D003135 5.8e-13 79.0 61 70.5
Aqoxy1G02592 Aquilegia oxysepala HOM05D002808 ORTHO05D003135 7.6e-13 78.6 64 67.2
PGR004G0378 Punica granatum HOM05D002808 ORTHO05D003135 7.6e-13 78.6 60 63.3
Manes.13G148600 Manihot esculenta HOM05D002808 ORTHO05D003135 9.9e-13 78.2 70 61.4
Phvul.002G225500 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 9.9e-13 78.2 61 68.9
Nitab4.5_0001820g0140 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.3e-12 77.8 68 64.7
Nitab4.5_0009790g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 1.3e-12 77.8 68 64.7
PGSC0003DMG402022374 Solanum tuberosum HOM05D002808 ORTHO05D003135 1.3e-12 77.8 68 67.6
CANSAT64G0853 Cannabis sativa HOM05D002808 ORTHO05D003135 2.2e-12 77.0 190 43.7
MD05G1320900 Malus domestica HOM05D002808 ORTHO05D003135 2.2e-12 77.0 70 64.3
Sopen02g023520 Solanum pennellii HOM05D002808 ORTHO05D003135 2.2e-12 77.0 68 66.2
Nitab4.5_0002066g0060 Nicotiana tabacum HOM05D002808 ORTHO05D003135 2.9e-12 76.6 66 65.2
Peaxi162Scf00748g00011 Petunia axillaris HOM05D002808 ORTHO05D003135 2.9e-12 76.6 68 64.7
Solyc02g078660.4 Solanum lycopersicum HOM05D002808 ORTHO05D003135 2.9e-12 76.6 68 66.2
Potri.004G038400 Populus trichocarpa HOM05D002808 ORTHO05D003135 3.8e-12 76.3 66 62.1
PGSC0003DMG400026858 Solanum tuberosum HOM05D002808 ORTHO05D003135 3.8e-12 76.3 66 65.2
CAN.G928.3 Capsicum annuum HOM05D002808 ORTHO05D003135 4.9e-12 75.9 64 64.1
Nn8g40700 Nelumbo nucifera HOM05D002808 ORTHO05D003135 4.9e-12 75.9 48 77.1
Sabra11G0032700 Salix brachista HOM05D002808 ORTHO05D003135 4.9e-12 75.9 66 60.6
VMungo0540G0036 Vigna mungo HOM05D002808 ORTHO05D003135 4.9e-12 75.9 60 65.0
MELO3C002575.2 Cucumis melo HOM05D002808 ORTHO05D003135 6.4e-12 75.5 66 60.6
Cfa014582 Carpinus fangiana HOM05D002808 ORTHO05D003135 8.4e-12 75.1 161 47.2
Nitab4.5_0003341g0020 Nicotiana tabacum HOM05D002808 ORTHO05D003135 8.4e-12 75.1 64 64.1
Solyc03g006530.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 8.4e-12 75.1 66 63.6
Sopen03g002530 Solanum pennellii HOM05D002808 ORTHO05D003135 8.4e-12 75.1 66 63.6
Phvul.006G188600 Phaseolus vulgaris HOM05D002808 ORTHO05D003135 1.1e-11 74.7 60 65.0
Sabra04G0023500 Salix brachista HOM05D002808 ORTHO05D003135 1.1e-11 74.7 66 60.6
Hund21253 Selenicereus undatus HOM05D002808 ORTHO05D003135 1.1e-11 74.7 67 67.2
Glyma.15G070800 Glycine max HOM05D002808 ORTHO05D003135 1.4e-11 74.3 253 36.0
Lj1A1209T61 Lonicera japonica HOM05D002808 ORTHO05D003135 1.4e-11 74.3 67 68.7
Manes.17G042200 Manihot esculenta HOM05D002808 ORTHO05D003135 1.4e-11 74.3 66 57.6
Potri.011G047100 Populus trichocarpa HOM05D002808 ORTHO05D003135 1.4e-11 74.3 66 60.6
RhsimUnG0043100 Rhododendron simsii HOM05D002808 ORTHO05D003135 1.4e-11 74.3 66 60.6
RcHm_v2.0_Chr5g0007601 Rosa chinensis HOM05D002808 ORTHO05D003135 1.4e-11 74.3 68 63.2
Glyma.13G183300 Glycine max HOM05D002808 ORTHO05D003135 1.9e-11 73.9 61 65.6
Lj6g0001777 Lotus japonicus HOM05D002808 ORTHO05D003135 1.9e-11 73.9 61 67.2
Medtr2g013000 Medicago truncatula HOM05D002808 ORTHO05D003135 1.9e-11 73.9 61 65.6
Nitab4.5_0006098g0010 Nicotiana tabacum HOM05D002808 ORTHO05D003135 2.4e-11 73.6 64 64.1
Peaxi162Scf00031g00821 Petunia axillaris HOM05D002808 ORTHO05D003135 2.4e-11 73.6 67 62.7
Peaxi162Scf01021g00005 Petunia axillaris HOM05D002808 ORTHO05D003135 2.4e-11 73.6 66 60.6
Psat1g206480 Pisum sativum HOM05D002808 ORTHO05D003135 2.4e-11 73.6 61 65.6
Glyma.07G193100 Glycine max HOM05D002808 ORTHO05D003135 3.2e-11 73.2 61 65.6
TPR.G12045 Trifolium pratense HOM05D002808 ORTHO05D003135 3.2e-11 73.2 62 67.7
Eucgr.L02437 Eucalyptus grandis HOM05D002808 ORTHO05D003135 4.2e-11 72.8 70 54.3
PGR042G1039 Punica granatum HOM05D002808 ORTHO05D003135 4.2e-11 72.8 68 61.8
Ciclev10017687m.g Citrus clementina HOM05D002808 ORTHO05D003135 5.5e-11 72.4 71 64.8
SalBow8G4287 Salvia bowleyana HOM05D002808 ORTHO05D003135 5.5e-11 72.4 68 64.7
SalBow8G5370 Salvia bowleyana HOM05D002808 ORTHO05D003135 5.5e-11 72.4 68 64.7
EL10Ac8g20311 Beta vulgaris HOM05D002808 ORTHO05D003135 7.1e-11 72.0 61 65.6
vmacro03838 Vaccinium macrocarpon HOM05D002808 ORTHO05D003135 7.1e-11 72.0 49 71.4
arahy.Tifrunner.gnm1.ann1.V35IN5 Arachis hypogaea HOM05D002808 ORTHO05D003135 1.2e-10 71.2 60 61.7
MSTRG.7317 Avicennia marina HOM05D002808 ORTHO05D003135 1.6e-10 70.9 65 63.1
Ca_18516_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 1.6e-10 70.9 62 66.1
Cpa.g.sc530.3 Carica papaya HOM05D002808 ORTHO05D003135 2.7e-10 70.1 64 59.4
Sed0028146 Sechium edule HOM05D002808 ORTHO05D003135 2.7e-10 70.1 66 60.6
CiPaw.03G174400 Carya illinoinensis HOM05D002808 ORTHO05D003135 3.5e-10 69.7 164 43.3
AUR62014773 Chenopodium quinoa HOM05D002808 ORTHO05D003135 3.5e-10 69.7 61 63.9
AUR62016958 Chenopodium quinoa HOM05D002808 ORTHO05D003135 3.5e-10 69.7 61 63.9
Medtr4g089110 Medicago truncatula HOM05D002808 ORTHO05D003135 3.5e-10 69.7 62 64.5
Atru.chr10.1957 Acer truncatum HOM05D002808 ORTHO05D003135 4.6e-10 69.3 67 59.7
Lsat_1_v5_gn_4_54280 Lactuca sativa HOM05D002808 ORTHO05D003135 4.6e-10 69.3 70 61.4
TPR.G36820 Trifolium pratense HOM05D002808 ORTHO05D003135 4.6e-10 69.3 61 65.6
Cc00_g10610 Coffea canephora HOM05D002808 ORTHO05D003135 6.0e-10 68.9 67 62.7
Cc02_g12840 Coffea canephora HOM05D002808 ORTHO05D003135 6.0e-10 68.9 67 62.7
Cc03_g09780 Coffea canephora HOM05D002808 ORTHO05D003135 6.0e-10 68.9 67 62.7
Cc09_g10780 Coffea canephora HOM05D002808 ORTHO05D003135 6.0e-10 68.9 67 62.7
arahy.Tifrunner.gnm1.ann1.2NE36Q Arachis hypogaea HOM05D002808 ORTHO05D003135 1.0e-09 68.2 60 60.0
GSVIVG01007118001 Vitis vinifera HOM05D002808 ORTHO05D003135 1.0e-09 68.2 66 57.6
Atru.chr10.1958 Acer truncatum HOM05D002808 ORTHO05D003135 1.3e-09 67.8 65 63.1
Ca_00303_v3 Cicer arietinum L. HOM05D002808 ORTHO05D003135 1.3e-09 67.8 62 62.9
Eucgr.E03356 Eucalyptus grandis HOM05D002808 ORTHO05D003135 1.3e-09 67.8 101 52.5
Nn1g06645 Nelumbo nucifera HOM05D002808 ORTHO05D003135 1.3e-09 67.8 60 60.0
Solyc10g009140.3 Solanum lycopersicum HOM05D002808 ORTHO05D003135 1.3e-09 67.8 64 59.4
Sopen10g004920 Solanum pennellii HOM05D002808 ORTHO05D003135 1.3e-09 67.8 64 59.4
PGSC0003DMG400022806 Solanum tuberosum HOM05D002808 ORTHO05D003135 1.3e-09 67.8 64 59.4
Thecc.04G200400 Theobroma cacao HOM05D002808 ORTHO05D003135 1.3e-09 67.8 70 54.3
Gohir.A10G023400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 2.3e-09 67.0 67 55.2
CARHR052240 Cardamine hirsuta HOM05D002808 ORTHO05D003135 3.0e-09 66.6 69 53.6
HanXRQChr16g0518261 Helianthus annuus HOM05D002808 ORTHO05D003135 3.0e-09 66.6 69 59.4
Oeu026002.1 Olea europaea HOM05D002808 ORTHO05D003639 3.0e-09 66.6 65 60.0
Ah.14g089170 Amaranthus hybridus HOM05D002808 ORTHO05D003135 3.9e-09 66.2 66 57.6
MD05G1320600 Malus domestica HOM05D002808 ORTHO05D003135 5.1e-09 65.9 49 69.4
arahy.Tifrunner.gnm1.ann1.KT8XA7 Arachis hypogaea HOM05D002808 ORTHO05D003135 6.7e-09 65.5 62 61.3
TWI38G0056 Tripterygium wilfordii HOM05D002808 ORTHO05D003135 8.7e-09 65.1 70 50.0
MD05G1320300 Malus domestica HOM05D002808 ORTHO05D003135 1.1e-08 64.7 49 67.3
Manes.16G024200 Manihot esculenta HOM05D002808 ORTHO05D003135 1.1e-08 64.7 67 53.7
AL2G15350 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 1.5e-08 64.3 69 55.1
CAN.G289.35 Capsicum annuum HOM05D002808 ORTHO05D003135 1.5e-08 64.3 66 57.6
AT1G61080 Arabidopsis thaliana HOM05D002808 ORTHO05D003135 1.9e-08 63.9 69 52.2
Glyma.13G242700 Glycine max HOM05D002808 ORTHO05D003135 1.9e-08 63.9 263 36.1
BcaC04g22302 Brassica carinata HOM05D002808 ORTHO05D003135 2.5e-08 63.5 69 55.1
BcaC09g49337 Brassica carinata HOM05D002808 ORTHO05D003135 2.5e-08 63.5 71 54.9
A01p29880 Brassica napus HOM05D002808 ORTHO05D003135 2.5e-08 63.5 71 54.9
C01p37760 Brassica napus HOM05D002808 ORTHO05D003135 2.5e-08 63.5 71 54.9
C09p20960 Brassica napus HOM05D002808 ORTHO05D003135 2.5e-08 63.5 69 55.1
BolC1t03738H Brassica oleracea HOM05D002808 ORTHO05D003135 2.5e-08 63.5 71 54.9
BolC9t54993H Brassica oleracea HOM05D002808 ORTHO05D003135 2.5e-08 63.5 69 55.1
BraA01t03116Z Brassica rapa HOM05D002808 ORTHO05D003135 2.5e-08 63.5 71 54.9
Gohir.D10G024200 Gossypium hirsutum HOM05D002808 ORTHO05D003135 2.5e-08 63.5 67 53.7
Gorai.011G025400 Gossypium raimondii HOM05D002808 ORTHO05D003135 2.5e-08 63.5 67 53.7
Aa31LG2G9520 Aethionema arabicum HOM05D002808 ORTHO05D003135 3.3e-08 63.2 69 52.2
BcaB04g20313 Brassica carinata HOM05D002808 ORTHO05D003135 3.3e-08 63.2 71 54.9
Sp2g03440 Schrenkiella parvula HOM05D002808 ORTHO05D003135 3.3e-08 63.2 74 52.7
Thhalv10023269m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 4.3e-08 62.8 71 54.9
Lj4g0010618 Lotus japonicus HOM05D002808 ORTHO05D003135 4.3e-08 62.8 62 56.5
Sed0005619 Sechium edule HOM05D002808 ORTHO05D003135 4.3e-08 62.8 66 54.5
ATR0693G055 Amborella trichopoda HOM05D002808 ORTHO05D003135 9.6e-08 61.6 70 52.9
Ah.09g235810 Amaranthus hybridus HOM05D002808 ORTHO05D003135 1.3e-07 61.2 68 57.4
SHI01938 Sapria himalayana HOM05D002808 ORTHO05D003135 1.3e-07 61.2 70 51.4
Carub.0001s1063 Capsella rubella HOM05D002808 ORTHO05D003135 1.6e-07 60.8 70 52.9
Potri.001G317001 Populus trichocarpa HOM05D002808 ORTHO05D003135 2.1e-07 60.5 66 53.0
THA.LOC104812819 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 2.1e-07 60.5 74 45.9
arahy.Tifrunner.gnm1.ann1.29L0YD Arachis hypogaea HOM05D002808 ORTHO05D003135 2.8e-07 60.1 62 56.5
Carub.0006s3294 Capsella rubella HOM05D002808 ORTHO05D003135 2.8e-07 60.1 66 54.5
Cc05_g06820 Coffea canephora HOM05D002808 ORTHO05D003135 2.8e-07 60.1 68 50.0
Thhalv10029303m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 2.8e-07 60.1 71 50.7
Thhalv10029342m.g Eutrema salsugineum HOM05D002808 ORTHO05D003135 2.8e-07 60.1 71 50.7
PGR042G0074 Punica granatum HOM05D002808 ORTHO05D003135 2.8e-07 60.1 63 57.1
GSVIVG01007119001 Vitis vinifera HOM05D002808 ORTHO05D003135 2.8e-07 60.1 116 37.9
AL6G48560 Arabidopsis lyrata HOM05D002808 ORTHO05D003135 3.7e-07 59.7 67 53.7
Manes.03G146300 Manihot esculenta HOM05D002808 ORTHO05D003135 4.8e-07 59.3 66 50.0
Sabra16G0200500 Salix brachista HOM05D002808 ORTHO05D003135 4.8e-07 59.3 66 51.5
Sp6g03960 Schrenkiella parvula HOM05D002808 ORTHO05D003135 4.8e-07 59.3 71 50.7
Sc17g0006360 Simmondsia chinensis HOM05D002808 ORTHO05D003135 4.8e-07 59.3 69 56.5
EL10Ac8g20310 Beta vulgaris HOM05D002808 ORTHO05D003135 6.2e-07 58.9 59 57.6
Gohir.A06G125900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 6.2e-07 58.9 68 54.4
Gohir.D06G129900 Gossypium hirsutum HOM05D002808 ORTHO05D003135 6.2e-07 58.9 68 54.4
Gohir.D09G071400 Gossypium hirsutum HOM05D002808 ORTHO05D003135 6.2e-07 58.9 68 50.0
Gorai.006G086300 Gossypium raimondii HOM05D002808 ORTHO05D003135 6.2e-07 58.9 68 50.0
Gorai.010G151600 Gossypium raimondii HOM05D002808 ORTHO05D003135 6.2e-07 58.9 68 54.4
CARHR252540 Cardamine hirsuta HOM05D002808 ORTHO05D003135 8.1e-07 58.5 71 50.7
SEGI_22605 Sequoiadendron giganteum HOM05D002808 ORTHO05D003135 8.1e-07 58.5 70 45.7
DCAR_028116 Daucus carota HOM05D002808 ORTHO05D003135 1.8e-06 57.4 262 34.4
THA.LOC104809567 Tarenaya hassleriana HOM05D002808 ORTHO05D003135 1.8e-06 57.4 69 53.6
Aa31LG9G9460 Aethionema arabicum HOM05D002808 ORTHO05D003135 2.4e-06 57.0 72 52.8
HPP92_016702 Vanilla planifolia HOM05D002808 ORTHO05D003135 2.4e-06 57.0 65 55.4
BcaB01g01857 Brassica carinata HOM05D002808 ORTHO05D003135 3.1e-06 56.6 71 47.9
A09p16920 Brassica napus HOM05D002808 ORTHO05D003135 3.1e-06 56.6 60 55.0
BraA09t37329Z Brassica rapa HOM05D002808 ORTHO05D003135 3.1e-06 56.6 60 55.0
Migut.M01174 Erythranthe guttata HOM05D002808 ORTHO05D003135 3.1e-06 56.6 65 50.8
BcaC04g21359 Brassica carinata HOM05D002808 ORTHO05D003135 5.3e-06 55.8 71 45.1
A09p25850 Brassica napus HOM05D002808 ORTHO05D003135 5.3e-06 55.8 71 45.1
C09p32730 Brassica napus HOM05D002808 ORTHO05D003135 5.3e-06 55.8 71 45.1
BolC9t56117H Brassica oleracea HOM05D002808 ORTHO05D003135 5.3e-06 55.8 71 45.1
BraA09t38155Z Brassica rapa HOM05D002808 ORTHO05D003135 5.3e-06 55.8 71 45.1
Carub.0002s0411 Capsella rubella HOM05D002808 ORTHO05D003135 5.3e-06 55.8 60 51.7
Aqoxy1G02591 Aquilegia oxysepala HOM05D002808 ORTHO05D003135 6.9e-06 55.5 75 52.0
ECA236G2337 Erigeron canadensis HOM05D002808 ORTHO05D003135 9.0e-06 55.1 64 51.6


User provided reference genes

Program Settings