Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 9.7e-90 333.6 182 100.0
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 5.2e-59 231.5 176 75.0
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 4.6e-55 218.4 172 69.2
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.3e-53 212.2 175 66.9
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.3e-53 211.1 173 68.8
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-51 206.5 176 65.3
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.1e-48 195.3 173 65.3
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 6.0e-47 191.4 178 64.0
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 7.8e-47 191.0 174 63.8
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.7e-46 189.9 174 64.9
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 2.3e-46 189.5 177 63.8
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.9e-45 186.4 174 62.6
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 9.5e-45 184.1 179 60.9
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 9.5e-45 184.1 179 60.9
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 9.5e-45 184.1 170 62.9
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.2e-44 183.7 177 59.9
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.6e-44 183.3 176 59.7
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 8.1e-44 181.0 179 61.5
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 8.1e-44 181.0 176 63.1
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.4e-43 180.3 175 63.4
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.8e-43 179.9 179 59.8
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 2.0e-42 176.4 172 61.6
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 3.4e-42 175.6 172 61.0
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 4.4e-42 175.3 178 59.0
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 2.2e-41 172.9 178 55.1
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 4.9e-41 171.8 172 57.0
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 6.4e-41 171.4 174 59.8
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.9e-40 169.9 177 57.6
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.0e-38 162.5 177 57.1
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 3.9e-38 162.2 178 53.4
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.1e-37 160.6 176 52.8
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.1e-37 160.6 177 56.5
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 1.5e-37 160.2 180 55.6
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.5e-37 160.2 179 53.1
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 2.5e-37 159.5 174 53.4
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 9.5e-37 157.5 176 58.5
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 3.6e-36 155.6 172 55.8
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.7e-36 155.2 195 49.2
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 6.2e-36 154.8 177 54.8
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.1e-35 154.1 174 51.7
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.4e-35 153.7 181 51.9
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.5e-34 150.2 173 52.6
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.5e-34 150.2 176 51.7
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.5e-34 150.2 176 55.1
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 2.6e-34 149.4 179 52.5
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 7.6e-34 147.9 148 60.8
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 3.8e-33 145.6 188 53.7
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 3.8e-33 145.6 189 49.2
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 3.8e-33 145.6 177 52.0
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 4.9e-33 145.2 179 51.4
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 2.4e-32 142.9 175 47.4
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 3.2e-32 142.5 173 49.1
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.1e-32 142.1 173 50.9
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 7.1e-32 141.4 187 47.6
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 7.1e-32 141.4 178 48.9
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 7.1e-32 141.4 179 51.4
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 9.2e-32 141.0 173 49.7
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 9.2e-32 141.0 172 51.2
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 9.2e-32 141.0 179 49.7
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.6e-31 140.2 173 50.9
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.0e-30 136.0 179 50.3
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 3.9e-30 135.6 145 55.2
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 5.1e-30 135.2 172 48.8
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 6.6e-30 134.8 178 50.0
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 6.6e-30 134.8 175 49.7
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 1.9e-29 133.3 178 52.2
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.9e-29 133.3 178 48.3
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.5e-29 132.9 170 47.6
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 5.6e-29 131.7 176 46.6
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 7.3e-29 131.3 175 45.1
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 7.3e-29 131.3 173 49.1
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.6e-28 130.2 175 49.1
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.6e-28 130.2 150 54.7
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.1e-28 129.8 178 50.0
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.8e-28 129.4 175 49.1
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 6.2e-28 128.3 173 45.7
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.4e-27 127.1 174 47.7
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 1.8e-27 126.7 148 52.7
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 2.4e-27 126.3 150 53.3
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 2.6e-26 122.9 170 45.3
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 3.4e-26 122.5 163 49.7
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 7.6e-26 121.3 169 45.6
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 9.9e-26 120.9 174 45.4
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 2.2e-25 119.8 174 43.7
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.9e-25 119.4 148 50.0
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 3.8e-25 119.0 152 48.7
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.9e-25 118.6 150 48.7
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 8.4e-25 117.9 152 49.3
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.1e-24 117.5 181 44.2
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.4e-24 117.1 156 46.2
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.9e-24 116.7 174 45.4
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.9e-24 116.7 167 44.3
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 5.4e-24 115.2 174 44.8
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 7.1e-24 114.8 177 43.5
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 9.3e-24 114.4 162 52.5
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.1e-23 113.2 179 45.3
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.1e-23 113.2 177 45.2
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 2.7e-23 112.8 177 43.5
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 6.0e-23 111.7 177 43.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 6.0e-23 111.7 177 43.5
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 7.8e-23 111.3 177 44.1
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 7.8e-23 111.3 177 44.1
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 7.8e-23 111.3 174 44.8
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.0e-22 110.9 175 45.1
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-22 110.5 177 42.9
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 1.3e-22 110.5 177 42.9
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.3e-22 109.8 175 44.6
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 2.3e-22 109.8 177 43.5
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 2.3e-22 109.8 173 45.1
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 3.9e-22 109.0 176 42.0
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 3.9e-22 109.0 176 42.0
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.9e-22 109.0 175 46.3
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 5.1e-22 108.6 173 42.8
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 5.1e-22 108.6 175 45.1
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 6.6e-22 108.2 177 43.5
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 6.6e-22 108.2 177 43.5
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.1e-21 107.5 178 44.9
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 1.1e-21 107.5 190 42.6
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 1.5e-21 107.1 174 42.0
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 3.3e-21 105.9 183 43.2
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 3.6e-20 102.4 189 38.6
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 4.8e-20 102.1 86 64.0
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 6.2e-20 101.7 180 41.1
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 8.1e-20 101.3 178 42.7
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 8.1e-20 101.3 175 41.1
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 4.0e-19 99.0 169 40.8
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 1.2e-18 97.4 174 42.0
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.5e-18 95.5 181 42.0
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 5.8e-18 95.1 180 40.0
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.7e-17 93.6 169 42.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 4.9e-17 92.0 174 40.2
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 6.4e-17 91.7 174 41.4
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.1e-16 90.9 181 40.3
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.1e-16 90.9 181 40.3
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 1.1e-16 90.9 175 39.4
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 1.4e-16 90.5 181 39.8
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 1.4e-16 90.5 181 39.8
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.4e-16 90.5 176 38.6
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 1.4e-16 90.5 184 34.8
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 9.3e-16 87.8 181 39.2
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.2e-15 87.4 187 36.9
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 4.6e-15 85.5 186 35.5
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 1.1e-13 80.9 82 53.7
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 3.3e-13 79.3 178 32.6
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 9.6e-13 77.8 149 36.9
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 3.6e-12 75.9 140 40.0
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 4.8e-12 75.5 181 37.0
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 3.4e-10 69.3 80 42.5
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 4.5e-10 68.9 95 42.1
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.5e-10 68.9 184 32.6
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 4.5e-10 68.9 45 77.8
Zm00001eb192600 Zea mays HOM05D004507 ORTHO05D004874 3.8e-09 65.9 201 31.3
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 6.4e-09 65.1 174 28.7
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 8.4e-09 64.7 47 70.2
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 2.1e-07 60.1 114 36.8
SEGI_22868 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 1.8e-06 57.0 180 29.4
HPP92_015856 Vanilla planifolia HOM05D004507 ORTHO05D004874 1.8e-06 57.0 59 50.8
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.3e-06 56.6 195 28.7
SEGI_00453 Sequoiadendron giganteum HOM05D001624 ORTHO05D001530 3.0e-06 56.2 182 26.4
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.0e-06 56.2 193 31.1
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 3.9e-06 55.8 184 28.3


User provided reference genes

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