Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 2.0e-130 469.2 240 100.0
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 2.2e-81 306.2 203 69.5
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 9.2e-80 300.8 198 71.7
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.5e-79 298.9 206 68.0
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.5e-79 298.9 198 69.2
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 4.6e-79 298.5 203 68.0
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 6.0e-79 298.1 219 67.6
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 7.8e-79 297.7 194 72.7
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 7.8e-79 297.7 193 71.5
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.0e-78 297.4 193 73.6
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.3e-78 297.0 198 70.2
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.3e-78 296.2 198 68.7
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 2.3e-78 296.2 193 70.5
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 3.9e-78 295.4 194 71.1
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 3.9e-78 295.4 192 70.8
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 5.0e-78 295.0 191 73.3
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 6.6e-78 294.7 193 72.0
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 6.6e-78 294.7 215 65.1
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.5e-77 292.7 193 69.4
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 3.3e-77 292.4 204 66.7
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 7.3e-77 291.2 198 69.7
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 1.2e-76 290.4 215 62.8
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 1.6e-76 290.0 198 71.2
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 1.6e-76 290.0 209 66.5
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 2.1e-76 289.7 192 69.8
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 2.8e-76 289.3 199 69.8
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 3.6e-76 288.9 193 69.9
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 3.6e-76 288.9 236 60.6
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 8.1e-76 287.7 193 71.5
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 8.1e-76 287.7 198 68.2
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.1e-75 287.3 200 68.0
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 1.8e-75 286.6 193 71.0
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.8e-75 286.6 192 67.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 1.8e-75 286.6 196 67.9
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 2.3e-75 286.2 198 67.7
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.3e-75 286.2 192 67.2
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 4.0e-75 285.4 222 64.4
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 5.2e-75 285.0 198 66.7
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.8e-75 284.6 198 67.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 6.8e-75 284.6 198 68.2
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 1.5e-74 283.5 198 67.2
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.5e-74 283.5 192 66.7
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 2.0e-74 283.1 198 67.7
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 2.0e-74 283.1 207 66.7
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 2.0e-74 283.1 198 68.7
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 2.0e-74 283.1 206 64.1
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 2.0e-74 283.1 198 67.7
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 2.0e-74 283.1 192 68.2
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 2.6e-74 282.7 192 67.7
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 2.6e-74 282.7 203 67.5
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.4e-74 282.3 198 66.7
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.4e-74 282.0 198 67.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 4.4e-74 282.0 198 65.7
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 4.4e-74 282.0 198 67.2
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 4.4e-74 282.0 192 69.3
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 5.8e-74 281.6 198 66.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.8e-74 281.6 193 66.8
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.8e-74 281.6 182 71.4
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 7.5e-74 281.2 193 68.9
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 9.8e-74 280.8 193 68.4
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.3e-73 280.4 201 67.7
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 1.3e-73 280.4 198 67.7
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 1.3e-73 280.4 198 67.2
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.7e-73 280.0 192 67.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 1.7e-73 280.0 198 69.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 2.9e-73 279.3 201 67.2
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.9e-73 279.3 198 67.7
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 3.7e-73 278.9 192 68.2
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.9e-73 278.5 234 58.5
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 1.1e-72 277.3 219 59.8
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.4e-72 276.9 194 68.6
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 1.4e-72 276.9 198 65.2
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 7.1e-72 274.6 198 65.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 7.1e-72 274.6 191 65.4
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 9.2e-72 274.2 189 67.7
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 9.2e-72 274.2 180 71.7
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.2e-71 273.9 198 65.2
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.2e-71 273.9 198 69.2
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 2.1e-71 273.1 200 67.0
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 2.1e-71 273.1 189 65.1
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 2.7e-71 272.7 189 66.7
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 2.7e-71 272.7 198 64.1
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 4.6e-71 271.9 198 64.1
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 7.8e-71 271.2 198 64.1
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.3e-70 270.4 180 68.3
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.7e-70 270.0 193 65.3
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.7e-70 270.0 193 64.2
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.3e-70 269.6 184 66.3
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 3.9e-70 268.9 198 64.1
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 5.1e-70 268.5 198 63.6
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 5.1e-70 268.5 198 62.1
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 5.1e-70 268.5 198 63.1
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 5.1e-70 268.5 198 65.7
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 8.6e-70 267.7 198 63.6
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.1e-69 267.3 193 64.8
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.1e-69 267.3 184 66.3
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.1e-69 267.3 184 66.3
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.5e-69 266.2 207 59.4
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 5.6e-69 265.0 198 63.1
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 7.3e-69 264.6 198 62.1
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 9.5e-69 264.2 192 66.7
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 9.5e-69 264.2 199 63.3
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 1.2e-68 263.8 198 62.6
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.6e-68 263.5 189 64.0
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.1e-68 263.1 198 63.6
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 2.1e-68 263.1 198 62.1
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 3.6e-68 262.3 191 65.4
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 4.7e-68 261.9 196 62.2
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 8.1e-68 261.2 189 64.0
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 1.3e-65 253.8 191 64.9
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 2.2e-65 253.1 185 66.5
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 8.4e-65 251.1 193 62.2
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 8.4e-65 251.1 182 66.5
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 1.9e-64 250.0 196 61.7
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 4.1e-64 248.8 198 60.1
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.2e-63 247.3 164 72.0
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 7.8e-63 244.6 182 62.6
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 3.0e-62 242.7 203 57.1
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.3e-61 238.8 171 66.7
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.6e-61 238.4 178 61.8
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 1.2e-58 230.7 190 58.4
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 1.5e-58 230.3 140 73.6
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 9.3e-56 221.1 142 71.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 9.3e-56 221.1 189 53.4
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.2e-55 220.7 196 55.6
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 2.3e-54 216.5 141 66.0
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 2.5e-53 213.0 144 67.4
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 5.6e-53 211.8 156 63.5
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 2.6e-50 203.0 159 61.6
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 2.4e-48 196.4 187 50.3
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.6e-47 193.7 215 48.8
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 1.5e-45 187.2 114 70.2
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.1e-40 171.0 190 45.8
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 2.4e-40 169.9 193 46.6
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 7.1e-40 168.3 98 72.4
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 3.5e-39 166.0 120 69.2
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 3.3e-37 159.5 198 45.5
Nn2g15094 Nelumbo nucifera HOM05D004717 ORTHO05D005636 4.3e-37 159.1 86 100.0
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 4.2e-32 142.5 188 44.1
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 1.2e-31 141.0 184 42.9
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.2e-26 124.4 74 71.6
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 4.2e-24 115.9 186 38.2
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 7.9e-23 111.7 68 72.1
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 7.4e-21 105.1 121 48.8
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 7.4e-21 105.1 118 47.5
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.8e-19 100.5 120 47.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 4.1e-19 99.4 137 43.8
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.9e-17 93.2 194 34.0
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 1.1e-16 91.3 71 54.9
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 9.4e-16 88.2 107 46.7
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 3.0e-14 83.2 58 69.0


User provided reference genes

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