Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 1.7e-168 595.9 301 100.0
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 2.1e-134 482.6 301 81.1
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 5.3e-133 478.0 308 78.9
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.2e-132 476.9 308 77.9
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 2.6e-132 475.7 308 76.9
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 3.4e-132 475.3 301 77.7
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.7e-131 473.0 301 78.4
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.4e-130 469.2 272 84.9
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.2e-130 468.4 301 77.7
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.5e-130 468.0 261 86.6
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 2.1e-129 466.1 278 82.0
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 2.7e-129 465.7 312 75.3
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.5e-129 465.3 301 77.1
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 4.6e-129 464.9 299 77.3
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.3e-128 463.4 296 76.4
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 1.3e-128 463.4 302 77.5
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.8e-128 463.0 309 76.1
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 1.8e-128 463.0 302 77.2
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 3.9e-128 461.8 301 76.7
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 5.1e-128 461.5 273 81.3
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 5.1e-128 461.5 302 77.2
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 8.7e-128 460.7 273 82.4
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 1.5e-127 459.9 283 79.2
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 1.5e-127 459.9 301 76.7
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.5e-127 459.9 301 76.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.9e-127 459.5 269 82.9
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 2.5e-127 459.1 290 78.6
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 2.5e-127 459.1 275 80.7
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 3.3e-127 458.8 315 73.3
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 5.6e-127 458.0 254 87.0
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 5.6e-127 458.0 310 75.8
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 7.4e-127 457.6 288 79.2
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 7.4e-127 457.6 308 75.6
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 9.6e-127 457.2 268 82.8
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 9.6e-127 457.2 302 75.5
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 9.6e-127 457.2 271 80.4
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 9.6e-127 457.2 309 76.4
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.3e-126 456.8 278 82.0
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.3e-126 456.8 301 75.4
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.6e-126 456.4 255 85.1
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.6e-126 456.4 279 80.3
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.6e-126 456.4 272 80.9
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.1e-126 456.1 279 79.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.1e-126 456.1 301 76.1
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 2.8e-126 455.7 302 75.8
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.8e-126 455.7 255 85.5
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 3.7e-126 455.3 263 83.7
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 4.8e-126 454.9 268 81.7
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 8.2e-126 454.1 308 75.6
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 8.2e-126 454.1 262 84.7
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.4e-125 453.4 261 83.9
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 2.4e-125 452.6 309 74.4
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 3.4e-124 448.7 300 75.0
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 3.4e-124 448.7 274 80.7
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.8e-124 448.0 282 77.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 5.8e-124 448.0 282 77.3
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.0e-123 447.2 254 85.0
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.0e-123 447.2 301 74.8
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.0e-123 447.2 273 79.5
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.7e-123 446.4 297 74.1
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.7e-123 446.4 300 74.0
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.7e-123 446.4 300 74.7
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.9e-123 445.7 243 86.0
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.9e-123 445.7 243 86.0
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 4.9e-123 444.9 284 76.8
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 8.4e-123 444.1 302 76.2
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.1e-122 443.7 297 73.1
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.4e-122 443.4 276 78.6
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.9e-122 443.0 260 81.5
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 2.5e-122 442.6 302 75.8
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 2.5e-122 442.6 275 77.8
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 5.5e-122 441.4 275 77.8
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 7.1e-122 441.0 251 84.9
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.2e-121 440.3 307 73.9
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.6e-121 439.9 285 77.2
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 2.1e-121 439.5 285 77.2
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.1e-121 439.5 297 73.1
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 2.7e-121 439.1 243 86.0
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 3.5e-121 438.7 308 71.1
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 6.0e-121 438.0 276 77.9
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.0e-120 437.2 279 78.9
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.8e-120 436.4 291 76.3
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 3.0e-120 435.6 286 75.9
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 6.7e-120 434.5 271 77.1
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 8.7e-120 434.1 302 73.8
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.1e-119 433.7 279 75.3
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.5e-119 433.3 275 76.7
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 4.3e-119 431.8 273 75.5
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 5.7e-119 431.4 263 79.1
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 1.6e-118 429.9 279 75.3
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 1.8e-117 426.4 304 70.4
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.8e-117 426.4 243 83.5
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 1.2e-116 423.7 273 78.4
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.4e-114 416.8 309 71.2
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.6e-113 413.3 252 79.4
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 4.5e-108 395.2 288 71.5
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 8.5e-107 391.0 219 86.3
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 7.9e-105 384.4 289 67.1
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 5.9e-100 368.2 279 65.9
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 5.9e-100 368.2 247 76.5
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.7e-99 366.7 276 71.0
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 5.0e-99 365.2 251 76.1
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.1e-98 364.0 285 63.2
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 5.5e-98 361.7 299 63.2
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 9.4e-98 360.9 259 66.4
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.7e-91 340.1 273 62.3
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 1.9e-90 336.7 192 85.9
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 4.2e-90 335.5 192 83.3
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 9.4e-90 334.3 190 85.8
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 2.1e-89 333.2 192 82.8
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.5e-87 327.0 190 83.2
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 4.4e-87 325.5 264 61.7
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 3.7e-86 322.4 173 87.3
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 7.7e-84 314.7 263 62.4
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.0e-83 314.3 183 83.1
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.5e-82 310.5 243 61.7
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.2e-82 308.9 256 61.3
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 1.1e-77 294.3 209 72.7
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.9e-66 256.9 257 53.3
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.4e-61 240.0 147 79.6
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.5e-58 230.7 256 52.0
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 5.6e-58 228.8 188 64.4
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 5.6e-42 175.6 134 67.2
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 3.3e-34 149.8 276 36.2
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 9.9e-31 138.3 85 76.5
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 7.3e-26 122.1 325 30.5
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 4.0e-24 116.3 77 83.1
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 2.6e-23 113.6 65 81.5
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 1.6e-20 104.4 71 66.2
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.3e-19 101.3 288 31.9
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 2.0e-15 87.4 104 53.8


User provided reference genes

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