Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.4e-99 366.3 189 100.0
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 9.5e-56 220.7 139 81.3
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 6.2e-55 218.0 139 80.6
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 5.8e-53 211.5 139 77.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 5.8e-53 211.5 131 78.6
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 9.9e-53 210.7 132 76.5
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.2e-52 209.5 135 76.3
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 6.4e-52 208.0 135 75.6
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.1e-51 207.2 135 74.8
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 3.2e-51 205.7 135 74.8
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 9.2e-51 204.1 135 74.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.1e-50 203.0 132 75.8
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 5.1e-49 198.4 135 71.9
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.5e-48 196.1 133 73.7
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.6e-47 193.4 135 69.6
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 2.8e-47 192.6 126 73.0
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 3.6e-47 192.2 133 72.2
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 3.6e-47 192.2 129 72.9
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.4e-46 189.5 135 70.4
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.4e-46 189.5 135 70.4
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 3.1e-46 189.1 139 65.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 6.8e-46 188.0 127 70.1
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 1.2e-45 187.2 135 67.4
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 5.8e-45 184.9 127 70.1
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 7.6e-45 184.5 127 70.9
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.7e-44 183.3 132 68.9
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.7e-44 183.3 135 67.4
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.7e-44 183.3 129 69.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.2e-44 183.0 129 69.0
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.9e-44 182.6 129 68.2
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 6.4e-44 181.4 121 72.7
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.1e-43 180.6 139 64.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 1.1e-43 180.6 129 67.4
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.4e-43 180.3 135 64.4
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.9e-43 179.9 129 67.4
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 3.2e-43 179.1 133 64.7
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 4.2e-43 178.7 137 67.2
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 5.4e-43 178.3 135 65.2
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.4e-43 178.3 133 65.4
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 5.4e-43 178.3 132 63.6
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 7.1e-43 177.9 129 66.7
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.2e-42 177.2 132 65.9
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 1.6e-42 176.8 135 65.2
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 6.0e-42 174.9 130 64.6
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.0e-41 174.1 130 63.1
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.3e-41 173.7 129 66.7
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 3.9e-41 172.2 132 67.4
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.9e-41 172.2 129 64.3
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.1e-41 171.8 136 63.2
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 5.1e-41 171.8 136 63.2
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 1.5e-40 170.2 137 64.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 1.5e-40 170.2 135 62.2
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 2.5e-40 169.5 137 63.5
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 3.3e-40 169.1 130 63.8
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 4.3e-40 168.7 111 75.7
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 4.3e-40 168.7 127 63.8
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 5.6e-40 168.3 128 61.7
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 7.3e-40 167.9 126 65.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 9.6e-40 167.5 136 61.8
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.2e-39 167.2 130 63.8
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.6e-39 166.8 126 62.7
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.8e-39 166.0 130 63.8
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 2.8e-39 166.0 141 58.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 3.6e-39 165.6 130 63.1
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 4.7e-39 165.2 136 60.3
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 6.2e-39 164.9 135 65.2
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 6.2e-39 164.9 130 60.0
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.4e-38 162.9 139 57.6
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 6.9e-38 161.4 138 58.0
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 9.0e-38 161.0 126 58.7
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 9.0e-38 161.0 147 56.5
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 9.0e-38 161.0 129 62.0
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.5e-37 160.2 130 60.8
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.0e-37 159.8 130 58.5
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.0e-37 159.8 139 53.2
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 3.4e-37 159.1 130 58.5
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 3.4e-37 159.1 128 58.6
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 4.4e-37 158.7 129 61.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 4.4e-37 158.7 139 60.4
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 7.6e-37 157.9 138 57.2
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 7.6e-37 157.9 138 57.2
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 7.6e-37 157.9 143 58.7
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 7.6e-37 157.9 129 63.6
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 9.9e-37 157.5 139 57.6
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 9.9e-37 157.5 129 60.5
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 9.9e-37 157.5 134 56.7
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.3e-36 157.1 143 55.9
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.3e-36 157.1 133 59.4
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 2.2e-36 156.4 135 61.5
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.2e-36 156.4 108 68.5
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.9e-36 156.0 136 62.5
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.9e-36 156.0 137 56.9
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-35 154.1 141 56.7
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-35 154.1 141 56.7
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.2e-35 152.5 126 59.5
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 5.4e-35 151.8 151 53.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 9.3e-35 151.0 141 56.0
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 9.3e-35 151.0 134 55.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.6e-34 150.2 127 57.5
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.7e-34 149.4 129 54.3
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 3.5e-34 149.1 126 57.9
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 4.6e-34 148.7 141 55.3
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 6.0e-34 148.3 127 57.5
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 5.1e-33 145.2 141 53.9
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 8.7e-33 144.4 162 49.4
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.1e-32 144.1 162 48.8
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.1e-32 144.1 95 71.6
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.9e-32 143.3 129 53.5
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 7.3e-32 141.4 138 52.2
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-31 140.6 120 56.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.6e-31 140.2 131 52.7
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 9.0e-30 134.4 106 61.3
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 3.4e-29 132.5 150 48.7
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 8.4e-28 127.9 86 72.1
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.4e-27 127.1 134 53.7
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.9e-27 126.7 131 50.4
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.8e-22 110.2 141 43.3
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 9.0e-22 107.8 141 42.6
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 9.0e-22 107.8 141 41.8
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 9.0e-22 107.8 141 42.6
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 5.8e-21 105.1 99 53.5
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 6.4e-20 101.7 96 51.0
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.4e-19 100.5 106 44.3
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 1.9e-19 100.1 96 47.9
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.9e-19 100.1 134 42.5
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 9.3e-19 97.8 103 44.7
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 6.0e-18 95.1 90 47.8
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 6.0e-18 95.1 132 40.2
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 7.9e-18 94.7 92 51.1
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 7.9e-18 94.7 126 41.3
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.6e-15 87.0 129 38.0
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.4e-14 84.0 87 48.3
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.6e-13 79.7 72 59.7
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 8.4e-12 74.7 106 41.5
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 8.4e-12 74.7 95 36.8
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 4.2e-11 72.4 48 68.8
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.6e-10 70.5 71 50.7
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 2.1e-10 70.1 132 30.3
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.5e-08 63.9 58 51.7
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 7.4e-08 61.6 114 32.5


User provided reference genes

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