Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.0e-25 118.6 74 100.0
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 2.5e-20 101.7 73 79.5
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 7.3e-20 100.1 72 87.5
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.6e-19 99.0 72 83.3
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 3.6e-19 97.8 72 80.6
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 3.6e-19 97.8 72 84.7
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 3.6e-19 97.8 72 81.9
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 6.2e-19 97.1 75 80.0
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 6.2e-19 97.1 72 84.7
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 6.2e-19 97.1 72 86.1
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 6.2e-19 97.1 72 86.1
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 8.1e-19 96.7 70 84.3
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 8.1e-19 96.7 75 85.3
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.1e-18 96.3 72 83.3
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.8e-18 95.5 72 83.3
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.8e-18 95.5 72 81.9
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 2.4e-18 95.1 72 81.9
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 2.4e-18 95.1 72 81.9
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 3.1e-18 94.7 72 80.6
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 3.1e-18 94.7 72 79.2
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 4.0e-18 94.4 73 82.2
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 4.0e-18 94.4 73 82.2
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 9.0e-18 93.2 72 77.8
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.2e-17 92.8 75 84.0
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 1.5e-17 92.4 74 78.4
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.5e-17 92.4 72 72.2
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 2.0e-17 92.0 72 83.3
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.0e-17 92.0 72 87.5
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 2.0e-17 92.0 72 79.2
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 2.6e-17 91.7 72 84.7
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 2.6e-17 91.7 72 84.7
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.6e-17 91.7 75 72.0
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.6e-17 91.7 72 68.1
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 3.4e-17 91.3 74 75.7
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 3.4e-17 91.3 74 78.4
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 3.4e-17 91.3 73 74.0
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 3.4e-17 91.3 73 74.0
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 4.5e-17 90.9 73 80.8
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 5.8e-17 90.5 72 80.6
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 5.8e-17 90.5 75 68.0
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 78.4
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 78.4
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 78.4
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 7.6e-17 90.1 72 76.4
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 9.9e-17 89.7 72 81.9
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 81.9
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 77.8
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.3e-16 89.4 75 80.0
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 80.6
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 1.3e-16 89.4 74 77.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 75.7
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.7e-16 89.0 74 75.7
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 78.4
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.2e-16 88.6 74 78.4
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 2.2e-16 88.6 72 80.6
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 2.9e-16 88.2 71 67.6
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 2.9e-16 88.2 72 77.8
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 4.9e-16 87.4 68 83.8
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 8.4e-16 86.7 72 79.2
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 8.4e-16 86.7 72 79.2
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 8.4e-16 86.7 72 79.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 8.4e-16 86.7 73 69.9
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.4e-15 85.9 70 78.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 1.4e-15 85.9 74 79.7
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.4e-15 85.9 72 79.2
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 1.9e-15 85.5 73 75.3
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.9e-15 85.5 72 79.2
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 1.9e-15 85.5 80 75.0
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.4e-15 85.1 73 76.7
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 77.8
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 77.8
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 77.8
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.4e-15 85.1 72 77.8
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.4e-15 85.1 71 73.2
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 69.3
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 3.2e-15 84.7 74 78.4
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.2e-15 84.7 71 70.4
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 77.3
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 4.2e-15 84.3 72 77.8
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 4.2e-15 84.3 72 76.4
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 4.2e-15 84.3 76 77.6
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 77.8
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 77.8
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 63.9
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 75.0
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.4e-15 84.0 72 70.8
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 5.4e-15 84.0 73 80.8
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.2e-14 82.8 76 77.6
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.2e-14 82.8 75 72.0
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.6e-14 82.4 74 78.4
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.6e-14 82.4 74 66.2
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 78.4
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 78.4
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.6e-14 80.9 74 79.7
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 6.0e-14 80.5 71 76.1
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 6.0e-14 80.5 74 64.9
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 7.9e-14 80.1 74 70.3
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.0e-13 79.7 73 72.6
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.0e-13 79.7 73 74.0
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.0e-13 79.7 73 69.9
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.0e-13 79.7 73 76.7
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.8e-13 79.0 73 76.7
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 2.3e-13 78.6 74 68.9
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 3.0e-13 78.2 74 68.9
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 2.5e-12 75.1 73 64.4
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.3e-12 74.7 72 76.4
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 3.3e-12 74.7 73 71.2
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 4.3e-12 74.3 47 85.1
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 5.6e-12 73.9 48 81.2
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 9.6e-12 73.2 74 62.2
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 9.6e-12 73.2 71 76.1
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 9.6e-12 73.2 72 66.7
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.3e-11 72.8 75 72.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.8e-11 71.6 73 69.9
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 3.7e-11 71.2 72 66.7
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 3.7e-11 71.2 72 66.7
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 3.7e-11 71.2 72 66.7
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 3.7e-11 71.2 72 66.7
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 4.8e-11 70.9 72 73.6
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 6.2e-11 70.5 73 69.9
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 6.2e-11 70.5 74 63.5
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 8.1e-11 70.1 46 82.6
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 8.1e-11 70.1 72 72.2
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 1.1e-10 69.7 74 70.3
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.1e-10 69.7 73 67.1
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.4e-10 69.3 74 71.6
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.4e-10 68.6 69 56.5
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 4.0e-10 67.8 73 71.2
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 4.0e-10 67.8 72 70.8
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 6.9e-10 67.0 77 53.2
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 9.0e-10 66.6 74 70.3
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 9.0e-10 66.6 65 69.2
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 9.0e-10 66.6 64 67.2
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 1.2e-09 66.2 72 70.8
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.2e-09 66.2 64 73.4
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 1.2e-09 66.2 68 76.5
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.2e-09 66.2 73 65.8
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 2.6e-09 65.1 64 65.6
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 4.5e-09 64.3 67 71.6
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 1.0e-08 63.2 49 75.5
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 1.0e-08 63.2 79 65.8
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.0e-08 63.2 112 46.4
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 1.3e-08 62.8 74 68.9
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 1.7e-08 62.4 72 59.7
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 2.9e-08 61.6 76 51.3
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 2.9e-08 61.6 73 67.1
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 3.8e-08 61.2 68 58.8
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 4.9e-08 60.8 69 66.7
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 6.5e-08 60.5 76 68.4
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 6.5e-08 60.5 127 44.9
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.1e-07 59.7 73 65.8
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 1.1e-07 59.7 73 68.5
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.1e-07 59.7 81 48.1
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.9e-07 58.9 50 74.0
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 3.2e-07 58.2 77 63.6
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 5.5e-07 57.4 76 67.1
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 9.3e-07 56.6 123 45.5
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 9.3e-07 56.6 76 61.8
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 1.6e-06 55.8 70 62.9
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 2.7e-06 55.1 72 65.3
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 2.7e-06 55.1 72 65.3
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 3.5e-06 54.7 77 61.0
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 3.5e-06 54.7 77 49.4
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 3.5e-06 54.7 75 64.0
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 4.6e-06 54.3 76 64.5
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 6.0e-06 53.9 77 63.6
CDE10G1218 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 7.9e-06 53.5 66 60.6


User provided reference genes

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