Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.0e-187 659.8 311 100.0
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 2.0e-172 609.0 311 90.7
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 1.1e-168 596.7 308 90.6
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.8e-168 595.9 311 87.8
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 5.8e-167 590.9 311 87.1
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 1.7e-166 589.3 308 88.6
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 2.2e-166 589.0 311 87.5
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 2.2e-166 589.0 308 88.3
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 2.9e-166 588.6 310 86.5
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 8.3e-166 587.0 307 88.6
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 2.4e-165 585.5 310 85.8
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 3.2e-165 585.1 308 87.3
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 3.2e-165 585.1 308 87.7
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 3.2e-165 585.1 305 88.5
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 3.2e-165 585.1 307 86.3
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 7.0e-165 583.9 309 85.4
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 5.1e-163 577.8 305 88.5
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 1.5e-162 576.2 305 88.2
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 5.6e-162 574.3 305 85.9
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 7.3e-162 573.9 312 86.2
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 9.5e-162 573.5 305 86.2
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 1.2e-161 573.2 309 85.1
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 1.2e-161 573.2 311 83.6
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 1.2e-161 573.2 313 85.9
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.6e-161 572.8 311 84.9
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.1e-161 572.4 305 86.2
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 3.6e-161 571.6 303 86.8
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.7e-161 571.2 305 85.9
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 6.2e-161 570.9 311 84.9
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 1.4e-160 569.7 311 84.6
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 1.8e-160 569.3 307 85.3
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 3.1e-160 568.5 307 86.0
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 5.2e-160 567.8 317 82.0
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 5.2e-160 567.8 308 84.4
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 5.2e-160 567.8 302 85.4
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 1.2e-159 566.6 317 81.4
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.2e-159 566.6 304 86.8
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 9.9e-159 563.5 317 81.4
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 9.9e-159 563.5 305 83.9
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 8.3e-158 560.5 314 81.8
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 1.4e-157 559.7 308 84.4
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 9.2e-157 557.0 308 84.1
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.6e-156 556.2 308 84.4
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 3.5e-156 555.1 301 83.4
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.1e-155 551.2 307 84.0
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 5.1e-155 551.2 308 83.4
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 3.3e-154 548.5 311 82.3
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 1.2e-153 546.6 307 82.1
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 2.1e-153 545.8 307 81.8
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 2.1e-153 545.8 311 82.3
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 2.8e-153 545.4 307 81.8
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 2.8e-153 545.4 307 81.8
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 2.8e-153 545.4 307 81.8
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 6.2e-153 544.3 302 81.8
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 5.2e-152 541.2 308 82.8
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 2.0e-151 539.3 306 79.7
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 4.4e-151 538.1 308 82.5
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 1.7e-150 536.2 306 79.4
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 8.4e-150 533.9 308 82.1
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 1.1e-149 533.5 301 82.7
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 2.4e-149 532.3 305 82.6
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 3.5e-148 528.5 317 78.5
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 4.6e-148 528.1 293 84.0
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.7e-147 526.2 307 81.1
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 1.1e-146 523.5 308 79.2
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 1.2e-145 520.0 405 65.4
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 1.6e-145 519.6 302 78.8
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 1.3e-142 510.0 357 69.5
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 1.7e-142 509.6 311 78.8
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 1.2e-140 503.4 280 82.9
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 2.5e-138 495.7 268 85.4
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 1.6e-137 493.0 263 86.3
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 2.2e-134 482.6 293 77.5
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 8.7e-131 470.7 302 74.8
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 1.1e-130 470.3 327 69.7
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 8.1e-129 464.2 264 81.8
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 7.9e-124 447.6 308 70.1
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 1.8e-123 446.4 257 80.9
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 6.7e-123 444.5 308 70.5
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 2.5e-122 442.6 298 65.4
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 4.1e-112 408.7 345 60.9
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 2.6e-98 362.8 311 62.1
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 2.4e-96 356.3 188 87.2
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 2.5e-93 346.3 269 65.1
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.6e-87 326.2 185 83.2
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 1.0e-86 324.3 165 87.9
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 1.7e-86 323.6 179 82.1
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 1.7e-86 323.6 168 86.9
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 1.7e-86 323.6 168 87.5
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 5.0e-86 322.0 168 86.3
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 5.0e-86 322.0 165 87.9
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 2.5e-85 319.7 168 86.3
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 3.2e-85 319.3 163 88.3
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 4.2e-85 318.9 168 85.7
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 7.2e-85 318.2 165 87.3
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 2.1e-84 316.6 165 87.3
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 2.7e-84 316.2 165 85.5
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.8e-83 313.5 164 86.0
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 1.2e-82 310.8 157 89.8
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 1.5e-82 310.5 158 88.6
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 4.8e-81 305.4 248 56.0
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 1.5e-77 293.9 185 75.1
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 2.0e-71 273.5 140 87.1
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.4e-59 234.2 122 89.3
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 3.4e-58 229.6 122 86.1
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 5.8e-58 228.8 122 84.4
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 9.8e-58 228.0 123 87.0
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 6.4e-57 225.3 122 82.8
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 1.9e-56 223.8 122 80.3
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 2.4e-56 223.4 122 85.2
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 5.4e-56 222.2 122 84.4
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 9.2e-56 221.5 122 84.4
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 9.2e-56 221.5 122 84.4
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 2.0e-55 220.3 122 83.6
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 4.6e-55 219.2 123 82.1
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 6.0e-55 218.8 122 82.8
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 5.6e-53 212.2 110 87.3
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 1.1e-51 208.0 117 80.3
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 6.8e-51 205.3 124 75.0
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 2.0e-50 203.8 142 71.1
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 2.6e-50 203.4 123 78.9
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 3.2e-48 196.4 100 85.0
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 5.2e-35 152.5 89 77.5
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 7.1e-32 142.1 254 35.4
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 2.1e-31 140.6 75 86.7
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 1.1e-29 134.8 71 87.3
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 4.0e-27 126.3 78 75.6
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 5.3e-27 125.9 66 87.9
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 2.8e-20 103.6 71 71.8
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 2.0e-18 97.4 66 69.7
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 9.3e-16 88.6 46 87.0
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 7.9e-15 85.5 47 80.9
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 8.1e-12 75.5 40 85.0
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 3.4e-10 70.1 34 88.2
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 2.1e-07 60.8 46 65.2


User provided reference genes

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