Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12316 Nelumbo nucifera HOM05D000375 ORTHO05D000240 1.6e-80 302.8 154 100.0
Nn8g38673 Nelumbo nucifera HOM05D000375 ORTHO05D000240 6.8e-60 234.2 126 93.7
Nn6g35612 Nelumbo nucifera HOM05D000375 ORTHO05D000240 9.2e-33 144.1 126 66.7
TAR636G1015 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.2e-29 133.7 125 64.0
Dinv42378 Davidia involucrata HOM05D000375 ORTHO05D000240 5.8e-27 124.8 134 56.0
Manes.04G144700 Manihot esculenta HOM05D000375 ORTHO05D000240 8.7e-23 110.9 133 53.4
GSVIVG01016762001 Vitis vinifera HOM05D000375 ORTHO05D000240 1.3e-21 107.1 132 55.3
Actinidia30207 Actinidia chinensis HOM05D000375 ORTHO05D000240 8.1e-21 104.4 124 57.3
Thecc.09G078900 Theobroma cacao HOM05D000375 ORTHO05D000240 1.1e-20 104.0 126 52.4
Dinv25566 Davidia involucrata HOM05D000375 ORTHO05D000240 1.8e-20 103.2 124 51.6
Lj6g0017209 Lotus japonicus HOM05D000375 ORTHO05D000240 9.0e-20 100.9 132 54.5
Gohir.A05G033300 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.2e-19 100.5 132 48.5
Duzib235G1475 Durio zibethinus HOM05D000375 ORTHO05D000240 2.6e-19 99.4 147 47.6
GSVIVG01015095001 Vitis vinifera HOM05D000375 ORTHO05D000240 2.6e-19 99.4 135 48.9
CiPaw.04G144300 Carya illinoinensis HOM05D000375 ORTHO05D000240 5.8e-19 98.2 129 50.4
Potri.003G065000 Populus trichocarpa HOM05D000375 ORTHO05D000240 9.9e-19 97.4 128 48.4
Duzib168G0891 Durio zibethinus HOM05D000375 ORTHO05D000240 1.7e-18 96.7 131 50.4
Haze_25987 Corylus avellana HOM05D000375 ORTHO05D000240 2.2e-18 96.3 127 50.4
Haze_25995 Corylus avellana HOM05D000375 ORTHO05D000240 2.2e-18 96.3 127 50.4
Glyma.07G038400 Glycine max HOM05D000375 ORTHO05D000240 2.9e-18 95.9 131 47.3
Gorai.009G035200 Gossypium raimondii HOM05D000375 ORTHO05D000240 2.9e-18 95.9 125 50.4
Cpa.g.sc28.61 Carica papaya HOM05D000375 ORTHO05D000240 4.9e-18 95.1 128 51.6
Phvul.010G130000 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 4.9e-18 95.1 131 48.1
Aqoxy7G01054 Aquilegia oxysepala HOM05D000375 ORTHO05D000240 6.4e-18 94.7 125 48.8
Prupe.7G201000 Prunus persica HOM05D000375 ORTHO05D000240 8.4e-18 94.4 136 47.8
Thecc.06G120100 Theobroma cacao HOM05D000375 ORTHO05D000240 1.4e-17 93.6 151 45.0
Sed0007816 Sechium edule HOM05D000375 ORTHO05D000240 9.3e-17 90.9 124 46.0
TAR624G0216 Trochodendron aralioides HOM05D000375 ORTHO05D000240 1.6e-16 90.1 124 49.2
CAN.G1231.32 Capsicum annuum HOM05D000375 ORTHO05D000240 2.7e-16 89.4 121 47.9
Gohir.D05G034800 Gossypium hirsutum HOM05D000375 ORTHO05D000240 2.7e-16 89.4 132 44.7
Sabra06G0112100 Salix brachista HOM05D000375 ORTHO05D000240 3.5e-16 89.0 128 50.0
Sabra06G0113400 Salix brachista HOM05D000375 ORTHO05D000240 3.5e-16 89.0 128 50.0
Sabra01G0142000 Salix brachista HOM05D000375 ORTHO05D000240 7.9e-16 87.8 127 46.5
Duzib187G0605 Durio zibethinus HOM05D000375 ORTHO05D000240 3.0e-15 85.9 126 44.4
CANSAT56G2870 Cannabis sativa HOM05D000375 ORTHO05D000240 8.7e-15 84.3 132 50.0
Peaxi162Scf00127g00057 Petunia axillaris HOM05D000375 ORTHO05D000240 8.7e-15 84.3 133 43.6
Potri.006G143200 Populus trichocarpa HOM05D000375 ORTHO05D000240 1.9e-14 83.2 128 46.1
Actinidia21789 Actinidia chinensis HOM05D000375 ORTHO05D000240 4.3e-14 82.0 122 47.5
Actinidia32187 Actinidia chinensis HOM05D000375 ORTHO05D000240 4.3e-14 82.0 122 43.4
QL05p007235 Quercus lobata HOM05D000375 ORTHO05D000240 4.3e-14 82.0 147 40.1
TWI34G1128 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 4.3e-14 82.0 127 47.2
Potri.018G065400 Populus trichocarpa HOM05D000375 ORTHO05D000240 5.6e-14 81.6 131 46.6
VMungo0331G1101 Vigna mungo HOM05D000375 ORTHO05D000240 5.6e-14 81.6 131 43.5
Nitab4.5_0000024g0170 Nicotiana tabacum HOM05D000375 ORTHO05D000240 9.6e-14 80.9 120 48.3
Duzib150G0260 Durio zibethinus HOM05D000375 ORTHO05D000240 1.3e-13 80.5 132 46.2
Sed0018720 Sechium edule HOM05D000375 ORTHO05D000240 1.3e-13 80.5 128 44.5
Lj7A685T54 Lonicera japonica HOM05D000375 ORTHO05D000240 2.1e-13 79.7 171 39.2
CiPaw.01G218500 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.8e-13 79.3 129 40.3
QL11p000507 Quercus lobata HOM05D000375 ORTHO05D000240 3.6e-13 79.0 140 43.6
Manes.16G096400 Manihot esculenta HOM05D000375 ORTHO05D000240 6.2e-13 78.2 127 47.2
Medtr2g041430 Medicago truncatula HOM05D000375 ORTHO05D000240 6.2e-13 78.2 132 44.7
Psat1g133440 Pisum sativum HOM05D000375 ORTHO05D000240 6.2e-13 78.2 127 44.9
CSS0027503 Camellia sinensis var. sinensis HOM05D000375 ORTHO05D000240 8.1e-13 77.8 124 46.0
Glyma.09G068700 Glycine max HOM05D000375 ORTHO05D000240 8.1e-13 77.8 126 42.1
Sed0010247 Sechium edule HOM05D000375 ORTHO05D000240 1.4e-12 77.0 142 41.5
Nitab4.5_0002623g0050 Nicotiana tabacum HOM05D000375 ORTHO05D000240 1.8e-12 76.6 119 44.5
CANSAT56G2995 Cannabis sativa HOM05D000375 ORTHO05D000240 2.4e-12 76.3 137 43.1
vmacro06330 Vaccinium macrocarpon HOM05D000375 ORTHO05D000240 2.4e-12 76.3 126 43.7
Lj4g0008680 Lotus japonicus HOM05D000375 ORTHO05D000240 3.1e-12 75.9 132 41.7
Dinv20436 Davidia involucrata HOM05D000375 ORTHO05D000240 4.0e-12 75.5 127 43.3
Sabra18G0058100 Salix brachista HOM05D000375 ORTHO05D000240 4.0e-12 75.5 131 46.6
TWI63G1479 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 5.3e-12 75.1 127 44.9
TWI32G0116 Tripterygium wilfordii HOM05D000375 ORTHO05D000240 6.9e-12 74.7 124 47.6
Manes.11G020200 Manihot esculenta HOM05D000375 ORTHO05D000240 9.0e-12 74.3 131 42.0
CiPaw.03G207600 Carya illinoinensis HOM05D000375 ORTHO05D000240 2.0e-11 73.2 135 44.4
Lalb_Chr25g0281311 Lupinus albus HOM05D000375 ORTHO05D000240 2.6e-11 72.8 148 41.2
ATR0598G303 Amborella trichopoda HOM05D000375 ORTHO05D000240 4.5e-11 72.0 123 43.9
MSTRG.26462 Avicennia marina HOM05D000375 ORTHO05D000240 4.5e-11 72.0 128 43.0
TPR.G28672 Trifolium pratense HOM05D000375 ORTHO05D000240 4.5e-11 72.0 127 40.2
Potri.001G169100 Populus trichocarpa HOM05D000375 ORTHO05D000240 5.8e-11 71.6 130 42.3
Haze_16033 Corylus avellana HOM05D000375 ORTHO05D000240 7.6e-11 71.2 134 42.5
MD09G1183300 Malus domestica HOM05D000375 ORTHO05D000240 7.6e-11 71.2 141 41.8
FAN09G2499 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.3e-10 70.5 136 42.6
ClCG07G014070 Citrullus lanatus HOM05D000375 ORTHO05D000240 1.7e-10 70.1 135 40.0
Phvul.009G228000 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 2.2e-10 69.7 125 41.6
VMungo1309G0393 Vigna mungo HOM05D000375 ORTHO05D000240 2.9e-10 69.3 127 43.3
Medtr4g125490 Medicago truncatula HOM05D000375 ORTHO05D000240 4.9e-10 68.6 120 45.0
Phvul.003G131800 Phaseolus vulgaris HOM05D000375 ORTHO05D000240 4.9e-10 68.6 128 43.8
VMungo1215G0942 Vigna mungo HOM05D000375 ORTHO05D000240 4.9e-10 68.6 131 44.3
CsaV3_3G031320 Cucumis sativus L. HOM05D000375 ORTHO05D000240 6.4e-10 68.2 133 42.1
CiPaw.02G135700 Carya illinoinensis HOM05D000375 ORTHO05D000240 8.4e-10 67.8 130 40.0
FvH4_6g34730 Fragaria vesca HOM05D000375 ORTHO05D000240 1.1e-09 67.4 136 41.9
FAN02G1705 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.1e-09 67.4 136 41.9
FAN14G2500 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.1e-09 67.4 136 41.9
Cpa.g.sc25.118 Carica papaya HOM05D000375 ORTHO05D000240 1.4e-09 67.0 137 38.7
Cc06_g12040 Coffea canephora HOM05D000375 ORTHO05D000240 1.4e-09 67.0 166 35.5
COL.COLO4_18110 Corchorus olitorius HOM05D000375 ORTHO05D000240 1.4e-09 67.0 136 40.4
Eucgr.C00823 Eucalyptus grandis HOM05D000375 ORTHO05D000240 1.9e-09 66.6 131 40.5
Gohir.A10G053300 Gossypium hirsutum HOM05D000375 ORTHO05D000240 4.2e-09 65.5 138 43.5
RcHm_v2.0_Chr2g0145381 Rosa chinensis HOM05D000375 ORTHO05D000240 4.2e-09 65.5 135 43.0
Sed0012312 Sechium edule HOM05D000375 ORTHO05D000240 4.2e-09 65.5 126 36.5
FAN26G2446 Fragaria x ananassa HOM05D000375 ORTHO05D000240 1.2e-08 63.9 122 43.4
Glyma.13G109500 Glycine max HOM05D000375 ORTHO05D000240 1.2e-08 63.9 132 41.7
Gohir.D10G055100 Gossypium hirsutum HOM05D000375 ORTHO05D000240 1.2e-08 63.9 135 42.2
Psat4g016760 Pisum sativum HOM05D000375 ORTHO05D000240 1.6e-08 63.5 127 37.8
MSTRG.10520 Avicennia marina HOM05D000375 ORTHO05D000240 2.1e-08 63.2 117 41.0
FAN28G2382 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.1e-08 63.2 122 47.5
FvH4_1g08440 Fragaria vesca HOM05D000375 ORTHO05D000240 2.7e-08 62.8 122 43.4
FAN23G0528 Fragaria x ananassa HOM05D000375 ORTHO05D000240 2.7e-08 62.8 122 43.4
FAN19G2251 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.5e-08 62.4 122 43.4
FAN26G2069 Fragaria x ananassa HOM05D000375 ORTHO05D000240 3.5e-08 62.4 122 43.4
MSTRG.19468 Avicennia marina HOM05D000375 ORTHO05D000240 4.6e-08 62.0 124 40.3
Glyma.17G050200 Glycine max HOM05D000375 ORTHO05D000240 4.6e-08 62.0 137 40.1
Gorai.011G058800 Gossypium raimondii HOM05D000375 ORTHO05D000240 6.0e-08 61.6 143 41.3
AUR62001481 Chenopodium quinoa HOM05D000375 ORTHO05D000240 7.9e-08 61.2 140 35.0
Manes.03G039500 Manihot esculenta HOM05D000375 ORTHO05D000240 7.9e-08 61.2 115 42.6
Medtr8g020560 Medicago truncatula HOM05D000375 ORTHO05D000240 1.0e-07 60.8 135 37.0
SEGI_13970 Sequoiadendron giganteum HOM05D000375 ORTHO05D000240 1.0e-07 60.8 126 38.9
Atru.chr1.3939 Acer truncatum HOM05D000375 ORTHO05D000240 1.8e-07 60.1 159 34.0
Glyma.15G176500 Glycine max HOM05D000375 ORTHO05D000240 1.8e-07 60.1 124 40.3
MELO3C015513.2 Cucumis melo HOM05D000375 ORTHO05D000240 2.3e-07 59.7 124 35.5
CsaV3_1G040860 Cucumis sativus L. HOM05D000375 ORTHO05D000240 2.3e-07 59.7 124 35.5
PGSC0003DMG400013004 Solanum tuberosum HOM05D000375 ORTHO05D000240 3.0e-07 59.3 129 42.6
ClCG03G015180 Citrullus lanatus HOM05D000375 ORTHO05D000240 3.9e-07 58.9 126 38.1
PSO063G6301 Papaver somniferum HOM05D000375 ORTHO05D000240 3.9e-07 58.9 124 37.1
RcHm_v2.0_Chr2g0094541 Rosa chinensis HOM05D000375 ORTHO05D000240 6.7e-07 58.2 122 41.0
Atru.chr7.1694 Acer truncatum HOM05D000375 ORTHO05D000240 8.7e-07 57.8 128 38.3
Actinidia29924 Actinidia chinensis HOM05D000375 ORTHO05D000240 1.1e-06 57.4 124 40.3
PSO782G1866 Papaver somniferum HOM05D000375 ORTHO05D000240 1.1e-06 57.4 124 37.1
Sopen07g021120 Solanum pennellii HOM05D000375 ORTHO05D000240 1.1e-06 57.4 118 36.4
Lalb_Chr13g0299501 Lupinus albus HOM05D000375 ORTHO05D000240 1.9e-06 56.6 125 35.2
SalBow6G3723 Salvia bowleyana HOM05D000375 ORTHO05D000240 2.5e-06 56.2 113 39.8
COL.COLO4_30756 Corchorus olitorius HOM05D000375 ORTHO05D000240 3.3e-06 55.8 133 36.8
Rhsim03G0228700 Rhododendron simsii HOM05D000375 ORTHO05D000240 5.6e-06 55.1 125 38.4
Glyma.16G007600 Glycine max HOM05D000375 ORTHO05D000240 7.4e-06 54.7 140 35.7
MD15G1216000 Malus domestica HOM05D000375 ORTHO05D000240 9.6e-06 54.3 125 35.2


User provided reference genes

Program Settings