Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 5.1e-108 394.4 199 100.0
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.6e-101 372.9 199 95.5
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.6e-101 372.9 199 96.0
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 4.6e-101 371.3 199 95.5
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 4.6e-101 371.3 199 95.0
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 6.0e-101 370.9 199 95.5
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 6.0e-101 370.9 199 95.0
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 7.8e-101 370.5 199 95.5
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 7.8e-101 370.5 199 95.0
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 1.0e-100 370.2 199 95.5
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.3e-100 369.8 199 95.0
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.3e-100 369.8 199 95.0
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 1.7e-100 369.4 199 95.0
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 1.7e-100 369.4 199 94.5
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 1.7e-100 369.4 199 95.0
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 2.3e-100 369.0 199 94.5
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 2.3e-100 369.0 199 94.5
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 2.3e-100 369.0 199 94.5
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 3.9e-100 368.2 199 94.5
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 3.9e-100 368.2 199 94.5
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 5.1e-100 367.9 199 94.0
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 5.1e-100 367.9 196 95.9
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 6.6e-100 367.5 199 93.5
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 6.6e-100 367.5 196 94.9
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 6.6e-100 367.5 199 94.5
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 6.6e-100 367.5 199 95.0
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 8.7e-100 367.1 199 93.5
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.1e-99 366.7 199 94.5
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 1.1e-99 366.7 199 94.0
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 1.9e-99 365.9 199 93.5
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 2.5e-99 365.5 199 93.0
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 2.5e-99 365.5 199 93.5
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 2.5e-99 365.5 199 93.5
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 2.5e-99 365.5 199 94.5
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 2.5e-99 365.5 199 93.5
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 4.3e-99 364.8 199 92.5
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 7.3e-99 364.0 199 93.0
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 7.3e-99 364.0 199 94.0
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 9.6e-99 363.6 199 93.0
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 9.6e-99 363.6 199 93.0
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.3e-98 363.2 199 92.5
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 1.6e-98 362.8 199 92.5
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 2.1e-98 362.5 199 92.0
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 2.8e-98 362.1 199 92.5
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 3.6e-98 361.7 198 92.4
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 3.6e-98 361.7 198 92.4
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 3.6e-98 361.7 199 92.5
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 3.6e-98 361.7 198 92.4
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.6e-98 361.7 199 92.0
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 3.6e-98 361.7 195 93.3
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 4.8e-98 361.3 191 96.3
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 4.8e-98 361.3 190 96.8
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 4.8e-98 361.3 199 92.5
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 6.2e-98 360.9 198 91.9
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 6.2e-98 360.9 199 92.5
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 8.1e-98 360.5 198 91.9
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 8.1e-98 360.5 198 91.9
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 8.1e-98 360.5 198 91.9
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 1.1e-97 360.1 198 92.4
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 1.4e-97 359.8 189 96.8
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 1.8e-97 359.4 199 92.0
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 3.1e-97 358.6 199 91.0
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 4.0e-97 358.2 193 93.3
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.0e-97 358.2 199 91.5
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 4.0e-97 358.2 199 91.5
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 4.0e-97 358.2 199 91.5
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 5.3e-97 357.8 199 91.0
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 6.9e-97 357.5 199 91.0
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 6.9e-97 357.5 189 95.8
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 9.0e-97 357.1 199 91.0
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 9.0e-97 357.1 199 90.5
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.2e-96 356.7 189 94.7
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 1.5e-96 356.3 199 88.9
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.5e-96 356.3 193 93.3
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.5e-96 356.3 199 89.4
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.5e-96 356.3 199 91.0
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 2.0e-96 355.9 199 91.0
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 2.0e-96 355.9 199 91.0
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 2.6e-96 355.5 191 93.2
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 2.6e-96 355.5 199 89.9
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 3.4e-96 355.1 199 89.4
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 3.4e-96 355.1 192 93.2
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 4.5e-96 354.8 189 94.7
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 5.8e-96 354.4 189 95.2
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 5.8e-96 354.4 193 93.3
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 5.8e-96 354.4 195 91.8
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 7.6e-96 354.0 199 90.5
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.3e-95 353.2 195 91.3
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.3e-95 353.2 196 90.3
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.7e-95 352.8 199 88.4
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 2.9e-95 352.1 200 89.5
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 3.8e-95 351.7 190 93.2
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 6.4e-95 350.9 190 93.2
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 1.1e-94 350.1 192 92.2
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 1.9e-94 349.4 189 93.1
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 1.9e-94 349.4 189 93.1
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 1.9e-94 349.4 189 93.1
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 1.9e-94 349.4 190 93.2
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 4.2e-94 348.2 221 83.3
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 5.4e-94 347.8 189 93.1
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 5.4e-94 347.8 189 93.1
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 5.4e-94 347.8 199 87.4
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 2.1e-93 345.9 190 90.5
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 1.3e-92 343.2 190 90.0
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 1.1e-91 340.1 220 81.4
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 2.5e-91 339.0 199 87.9
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 1.8e-89 332.8 199 83.4
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.8e-89 332.8 199 84.9
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 9.0e-89 330.5 226 77.4
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 3.4e-88 328.6 199 82.9
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 7.6e-88 327.4 199 83.4
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 1.4e-86 323.2 172 94.2
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 2.4e-86 322.4 199 83.4
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 3.0e-84 315.5 199 77.9
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 7.4e-83 310.8 194 77.8
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 3.4e-80 302.0 199 81.4
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 7.6e-80 300.8 199 80.9
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 1.0e-79 300.4 196 82.1
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 1.3e-79 300.1 199 80.9
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 9.3e-78 293.9 199 79.4
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 7.9e-77 290.8 190 81.6
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 7.9e-77 290.8 190 81.6
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 5.1e-76 288.1 190 81.1
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 5.1e-76 288.1 166 86.7
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 5.7e-75 284.6 154 95.5
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.5e-70 269.2 195 71.8
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 2.1e-69 266.2 136 97.1
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.5e-62 242.7 142 83.1
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.9e-61 237.7 180 71.1
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 3.3e-59 232.3 128 92.2
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 9.7e-59 230.7 183 62.8
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.3e-55 220.3 131 85.5
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.5e-55 218.0 119 93.3
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 5.5e-54 214.9 148 76.4
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 2.6e-48 196.1 190 60.5
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 3.6e-45 185.7 187 49.7
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 1.5e-43 180.3 93 96.8
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 3.7e-42 175.6 168 54.2
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 7.7e-40 167.9 83 98.8
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.3e-39 167.2 123 73.2
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.8e-36 154.8 75 100.0
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.0e-35 153.3 75 98.7
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 6.3e-34 148.3 75 98.7
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.8e-27 124.4 74 87.8
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 2.2e-26 123.2 74 86.5
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 4.3e-22 109.0 58 89.7
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 5.7e-19 98.6 58 87.9
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 3.7e-18 95.9 109 52.3
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 7.0e-17 91.7 113 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.1e-14 84.3 52 75.0
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 1.1e-14 84.3 104 50.0
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 1.5e-14 84.0 42 95.2
C09p49950 Brassica napus HOM05D004575 ORTHO05D033743 4.3e-14 82.4 90 54.4
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 5.6e-14 82.0 51 80.4
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 8.0e-13 78.2 41 95.1
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 5.8e-11 72.0 48 72.9
Gorai.007G286700 Gossypium raimondii HOM05D004575 ORTHO05D047984 2.9e-10 69.7 37 91.9
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 3.2e-09 66.2 47 74.5
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 3.2e-09 66.2 47 74.5
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 8.6e-07 58.2 39 74.4
MELO3C033919.2 Cucumis melo HOM05D004575 ORTHO05D168156 7.3e-06 55.1 69 43.5


User provided reference genes

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