Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 0.0e+00 1207.6 635 100.0
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.1e-180 637.5 638 59.6
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 6.5e-157 558.5 639 51.2
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 3.6e-155 552.7 633 50.9
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.1e-151 539.7 635 48.7
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 3.1e-151 539.7 635 48.3
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 4.1e-151 539.3 639 49.8
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 4.5e-150 535.8 636 48.4
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 4.5e-150 535.8 635 48.3
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.3e-149 534.3 632 48.3
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 3.6e-147 526.2 633 48.0
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 6.1e-147 525.4 638 48.0
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 6.1e-147 525.4 635 47.6
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.8e-146 523.9 640 46.6
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.9e-146 522.7 639 48.5
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 6.7e-146 521.9 639 48.4
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 5.7e-145 518.8 643 47.1
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 9.7e-145 518.1 633 45.8
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.3e-144 517.7 652 46.3
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.7e-144 517.3 640 48.3
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 8.2e-144 515.0 639 46.3
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.8e-143 513.8 633 47.4
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 3.8e-141 506.1 634 46.7
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.9e-140 503.8 641 46.0
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 2.5e-140 503.4 635 46.5
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 3.9e-138 496.1 642 43.9
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.1e-137 494.6 635 45.7
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.7e-136 490.7 633 45.0
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 2.8e-136 490.0 639 43.5
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.8e-136 489.2 642 43.9
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 8.2e-136 488.4 643 44.6
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 9.1e-135 485.0 644 43.5
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 9.1e-135 485.0 633 44.9
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.6e-134 483.4 633 44.7
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.5e-134 483.0 633 44.9
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.3e-133 481.1 640 46.2
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.8e-133 479.6 633 44.1
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 3.8e-133 479.6 647 44.2
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 3.2e-132 476.5 644 43.3
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.2e-132 476.5 651 43.3
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 9.4e-132 474.9 633 43.1
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 9.4e-132 474.9 633 43.1
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.2e-131 474.6 635 44.3
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.6e-131 474.2 629 44.0
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.7e-131 473.4 660 42.6
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.3e-130 470.3 636 43.1
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 4.8e-128 462.6 373 62.5
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.4e-127 461.1 636 42.3
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 5.3e-127 459.1 636 42.5
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 3.5e-126 456.4 636 42.3
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 1.3e-125 454.5 634 43.7
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.7e-125 454.1 625 43.8
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 3.8e-125 453.0 634 43.4
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 8.5e-125 451.8 323 66.6
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 8.5e-125 451.8 627 43.5
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 8.5e-125 451.8 632 43.2
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.2e-124 449.9 390 59.5
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 7.2e-124 448.7 639 42.9
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.1e-123 447.2 636 41.8
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 2.0e-121 440.7 640 43.3
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.3e-120 438.0 641 42.0
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.3e-120 438.0 641 42.0
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.3e-120 438.0 636 40.4
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.7e-120 437.6 644 42.1
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 3.7e-120 436.4 645 41.6
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 4.8e-120 436.0 635 41.7
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 4.8e-120 436.0 628 41.9
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 6.3e-120 435.6 638 40.9
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.4e-119 434.5 632 40.5
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 3.1e-119 433.3 634 41.8
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 5.4e-119 432.6 634 41.2
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 9.1e-119 431.8 636 41.4
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 2.0e-118 430.6 634 42.1
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.0e-117 428.3 646 41.5
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 2.3e-117 427.2 635 40.6
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 2.9e-117 426.8 630 41.6
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 3.8e-117 426.4 647 41.4
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 5.0e-117 426.0 637 41.4
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 6.6e-117 425.6 637 40.7
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 1.9e-116 424.1 326 62.3
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 3.3e-116 423.3 632 42.2
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.3e-116 423.3 630 40.2
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 9.5e-116 421.8 642 40.3
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 3.6e-115 419.9 634 40.1
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.2e-113 414.8 329 58.7
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.4e-113 412.9 634 38.8
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.4e-111 407.9 419 51.1
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.4e-111 407.9 637 41.6
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 3.5e-110 403.3 628 40.4
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 1.7e-109 401.0 628 39.2
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.5e-108 397.1 318 59.1
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 9.5e-108 395.2 643 43.1
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.6e-107 394.4 654 38.5
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 2.8e-107 393.7 636 38.4
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 3.6e-107 393.3 681 37.6
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.7e-107 392.9 637 39.6
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 8.9e-106 388.7 633 38.7
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.5e-105 387.9 641 40.2
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.4e-104 382.5 320 57.8
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 3.5e-102 376.7 636 36.9
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.0e-97 360.9 637 38.1
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 2.6e-97 360.5 619 37.8
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 9.8e-97 358.6 593 37.6
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.6e-94 351.3 567 39.2
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.0e-93 348.6 634 36.3
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 4.3e-92 343.2 590 37.6
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 9.5e-92 342.0 318 51.6
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.4e-90 338.2 337 49.6
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.3e-88 331.6 637 36.7
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 5.4e-87 326.2 319 51.4
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 1.1e-84 318.5 638 35.1
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 1.5e-84 318.2 638 35.1
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.9e-84 317.8 245 62.9
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 4.3e-84 316.6 640 34.7
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 7.3e-84 315.8 638 35.4
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.8e-83 313.9 644 33.7
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.4e-82 311.6 317 50.8
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.4e-82 311.6 637 34.5
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 8.9e-82 308.9 640 34.5
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 2.3e-77 294.3 644 33.1
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 7.3e-76 289.3 528 35.6
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 9.0e-74 282.3 657 33.3
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 4.2e-71 273.5 528 34.3
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 9.3e-71 272.3 213 63.4
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 8.7e-69 265.8 318 38.4
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.1e-68 265.4 564 33.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 4.8e-67 260.0 352 38.9
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 1.1e-66 258.8 641 35.4
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 1.5e-65 255.0 373 38.1
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 9.9e-65 252.3 351 39.9
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.7e-64 251.5 359 39.8
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 3.5e-62 243.8 250 48.4
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 7.9e-62 242.7 315 42.2
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 1.1e-58 232.3 274 46.4
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 8.7e-53 212.6 210 49.5
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 6.9e-50 203.0 267 39.3
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 4.3e-44 183.7 187 51.9
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 2.3e-37 161.4 574 29.3
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.9e-37 160.6 150 54.0
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 5.1e-37 160.2 332 32.8
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 7.4e-36 156.4 132 58.3
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 4.7e-30 137.1 94 63.8
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.4e-29 135.6 640 25.3
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.8e-29 135.2 136 52.2
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.0e-29 134.4 371 32.9
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.7e-27 127.5 326 30.1
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.1e-26 124.4 87 69.0
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 5.5e-23 113.6 168 37.5
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.1e-22 110.2 409 26.9
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 5.2e-21 107.1 226 35.8
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 9.7e-20 102.8 84 60.7
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.7e-19 102.1 70 64.3
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 9.1e-18 96.3 180 36.1
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 2.6e-17 94.7 71 63.4
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.5e-17 94.4 343 24.8
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 7.7e-17 93.2 234 27.8
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.2e-16 91.7 410 25.4
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 4.2e-15 87.4 86 47.7
Cfa025051 Carpinus fangiana HOM05D004232 ORTHO05D004909 5.5e-15 87.0 314 25.5
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.0e-13 82.8 337 25.5
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 1.0e-13 82.8 81 50.6
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 1.4e-13 82.4 336 25.3
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 1.8e-13 82.0 339 25.7
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 1.8e-13 82.0 336 25.0
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 3.0e-13 81.3 329 25.2
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 3.0e-13 81.3 342 23.7
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 4.0e-13 80.9 69 53.6
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 2.8e-11 74.7 319 24.1
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 8.3e-11 73.2 330 23.3
C06p53770 Brassica napus HOM05D004232 ORTHO05D004909 1.4e-10 72.4 152 36.8
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 4.1e-10 70.9 340 22.6
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 2.0e-09 68.6 90 43.3
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.2e-08 65.1 97 38.1
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 2.9e-08 64.7 89 38.2
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 7.2e-07 60.1 90 37.8


User provided reference genes

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