Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 2.1e-308 1061.6 562 100.0
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 5.1e-214 748.0 553 72.2
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.1e-205 720.3 562 68.3
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 4.8e-204 714.9 553 69.6
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 6.2e-204 714.5 552 68.5
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.4e-203 713.4 564 66.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.4e-200 703.4 548 67.5
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.2e-200 701.8 562 66.2
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.2e-199 700.3 557 67.7
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 2.1e-199 699.5 553 66.5
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.9e-197 693.0 551 66.6
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 7.4e-197 691.0 573 64.7
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 1.3e-196 690.3 559 67.6
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 1.6e-196 689.9 547 65.6
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 2.4e-195 686.0 562 66.5
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 5.3e-195 684.9 562 66.4
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 6.9e-195 684.5 558 64.9
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.0e-194 682.9 556 66.0
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 7.7e-194 681.0 559 65.3
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.3e-193 680.2 558 64.0
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 2.2e-193 679.5 552 66.1
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 2.2e-193 679.5 560 66.1
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 3.8e-193 678.7 558 65.6
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 6.5e-193 677.9 558 64.2
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 1.4e-192 676.8 555 65.0
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.5e-192 676.0 565 65.1
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.2e-192 675.6 563 65.0
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 5.5e-192 674.9 556 66.2
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 5.5e-192 674.9 562 64.9
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.2e-191 673.7 562 64.9
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 2.1e-191 672.9 573 62.8
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 2.7e-191 672.5 557 64.6
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.7e-191 672.5 563 65.0
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.0e-190 670.6 571 63.6
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.4e-190 670.2 574 62.2
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.3e-190 669.5 547 65.3
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.3e-190 669.5 547 65.4
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-190 669.1 566 62.5
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.0e-190 669.1 547 65.4
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 3.9e-190 668.7 553 65.1
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 8.8e-190 667.5 551 65.0
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 8.8e-190 667.5 557 65.4
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-189 666.4 569 62.6
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.7e-188 663.3 574 61.7
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.8e-188 662.5 574 61.7
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.1e-187 660.6 556 63.3
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 6.9e-187 657.9 553 62.2
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 2.6e-186 656.0 661 56.1
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 8.5e-185 651.0 558 63.4
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.4e-184 650.2 559 64.6
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 9.4e-184 647.5 561 62.7
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 2.7e-183 646.0 557 61.4
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 2.7e-183 646.0 562 62.8
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 2.3e-182 642.9 553 63.1
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 3.0e-182 642.5 553 64.2
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 5.1e-182 641.7 581 61.3
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 8.8e-182 641.0 560 63.6
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 2.0e-181 639.8 544 62.3
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 2.6e-181 639.4 553 63.3
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.7e-180 636.7 556 61.7
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.8e-180 636.0 555 62.3
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 2.8e-180 636.0 561 63.5
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 3.7e-180 635.6 554 63.4
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 8.2e-180 634.4 558 61.5
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.1e-179 634.0 549 61.9
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 4.1e-179 632.1 566 62.9
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 5.3e-179 631.7 558 62.7
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 2.0e-178 629.8 546 60.6
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.3e-177 627.1 558 63.4
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.9e-177 625.9 558 61.5
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 5.0e-177 625.2 556 59.5
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-176 623.6 560 60.7
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 5.5e-176 621.7 571 59.9
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 2.7e-175 619.4 558 60.8
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 6.1e-175 618.2 562 59.3
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.0e-174 615.5 562 59.1
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 5.2e-174 615.1 552 60.9
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 3.3e-173 612.5 559 59.7
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 7.0e-171 604.7 548 59.7
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 7.7e-170 601.3 546 61.2
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 2.8e-164 582.8 558 56.8
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 4.1e-163 578.9 591 55.5
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 5.4e-163 578.6 591 55.3
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 5.0e-161 572.0 561 56.9
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 8.0e-159 564.7 561 55.3
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 8.8e-158 561.2 574 53.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.2e-157 560.8 574 53.8
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 5.7e-157 558.5 580 52.8
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 2.2e-156 556.6 571 52.5
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.2e-156 556.6 564 56.7
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 3.7e-156 555.8 579 52.7
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 6.3e-156 555.1 575 53.9
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 9.1e-155 551.2 571 53.2
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.5e-154 548.9 570 53.0
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 1.1e-152 544.3 577 52.9
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 3.6e-151 539.3 579 50.9
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 8.0e-151 538.1 539 53.4
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.2e-149 534.3 564 52.7
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 4.4e-149 532.3 442 65.2
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 9.8e-149 531.2 416 70.2
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 5.4e-147 525.4 579 53.4
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.0e-146 523.5 572 50.2
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 2.9e-140 503.1 554 49.6
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 6.4e-140 501.9 546 54.0
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 5.6e-136 488.8 567 50.8
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.4e-134 484.2 426 62.2
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.2e-134 482.3 502 55.4
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.0e-130 468.8 526 51.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.3e-126 456.8 437 59.0
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 9.9e-125 451.4 556 46.6
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 1.1e-123 448.0 551 46.8
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 6.6e-121 438.7 354 66.4
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 6.2e-119 432.2 555 44.1
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.8e-118 430.6 305 72.1
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.0e-117 427.2 563 45.3
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 2.1e-111 407.1 281 73.0
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 1.8e-110 404.1 564 41.8
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 7.4e-96 355.5 399 49.1
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 6.0e-90 335.9 463 44.1
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 8.7e-89 332.0 478 45.4
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.5e-88 331.3 339 57.8
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.0e-81 308.5 511 42.9
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.4e-78 298.1 308 52.6
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.8e-68 263.5 173 73.4
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 8.8e-65 252.3 226 58.0
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.8e-63 247.3 221 62.0
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-63 247.3 490 36.7
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.8e-62 244.6 423 37.8
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 4.5e-61 240.0 158 75.3
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-49 200.7 325 41.8
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.0e-46 189.5 145 71.0
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.6e-42 178.3 144 61.1
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 6.1e-42 176.4 138 63.8
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 8.8e-41 172.6 139 62.6
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 8.6e-36 156.0 117 65.8
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 9.5e-35 152.5 117 64.1
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 1.0e-25 122.5 103 61.2
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-25 121.7 184 40.8
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-24 117.5 287 34.8
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 9.8e-24 115.9 86 67.4
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.2e-21 109.0 102 54.9
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-21 109.0 90 63.3
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.2e-16 92.4 70 65.7
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 8.3e-15 86.3 56 66.1
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 4.6e-13 80.5 164 36.6
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-12 79.3 165 34.5
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 4.3e-11 73.9 90 50.0
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-10 71.6 164 34.1
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-10 70.5 42 73.8
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 1.4e-09 68.9 174 34.5
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 2.0e-08 65.1 49 67.3
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 7.6e-08 63.2 52 63.5
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-07 61.6 156 30.8
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.4e-06 58.9 46 65.2
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-06 58.9 39 69.2
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-06 58.5 36 72.2
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 9.2e-06 56.2 44 56.8


User provided reference genes

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