Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12182 Nelumbo nucifera HOM05D002727 ORTHO05D002856 5.4e-118 427.6 200 100.0
Nn2g12179 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.2e-85 320.1 196 78.1
Nn2g12178 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.3e-76 289.3 174 78.7
Nn8g40140 Nelumbo nucifera HOM05D002727 ORTHO05D002856 7.7e-64 247.7 200 63.0
Nn8g39635 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.3e-63 246.9 153 74.5
Nn8g39630 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.6e-61 238.8 154 72.7
Nn8g40185 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.6e-61 238.8 202 60.4
Nn8g40139 Nelumbo nucifera HOM05D002727 ORTHO05D002856 6.7e-60 234.6 184 65.8
Nn8g40141 Nelumbo nucifera HOM05D002727 ORTHO05D002856 7.5e-59 231.1 149 72.5
Dinv42800 Davidia involucrata HOM05D002727 ORTHO05D002856 1.4e-36 157.1 128 59.4
Dinv42803 Davidia involucrata HOM05D002727 ORTHO05D002856 1.4e-36 157.1 128 59.4
Dinv43298 Davidia involucrata HOM05D002727 ORTHO05D002856 1.4e-36 157.1 128 59.4
Dinv43301 Davidia involucrata HOM05D002727 ORTHO05D002856 1.4e-36 157.1 128 59.4
MD03G1035100 Malus domestica HOM05D002727 ORTHO05D002856 3.7e-34 149.1 160 49.4
Rhsim01G0019500 Rhododendron simsii HOM05D002727 ORTHO05D002856 6.4e-34 148.3 111 63.1
MD03G1107500 Malus domestica HOM05D002727 ORTHO05D002856 1.8e-33 146.7 160 49.4
Prupe.1G100500 Prunus persica HOM05D002727 ORTHO05D002856 2.4e-33 146.4 146 51.4
Rhsim01G0018600 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.6e-32 143.7 193 43.5
Rhsim01G0020200 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.7e-32 142.9 111 60.4
Rhsim01G0018300 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.0e-31 141.0 128 54.7
Aqoxy4G00886 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 9.5e-30 134.4 145 50.3
QL02p098200 Quercus lobata HOM05D002727 ORTHO05D002856 1.2e-29 134.0 170 42.4
Aqoxy4G00561 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 6.8e-28 128.3 146 47.9
GSVIVG01023712001 Vitis vinifera HOM05D002727 ORTHO05D002856 8.9e-28 127.9 183 43.2
Aqoxy4G00571 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.5e-27 127.1 130 50.8
MD15G1046300 Malus domestica HOM05D002727 ORTHO05D002856 1.5e-27 127.1 130 48.5
Aqoxy3G02264 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 2.6e-27 126.3 143 50.3
Actinidia02639 Actinidia chinensis HOM05D002727 ORTHO05D002856 8.3e-26 121.3 142 51.4
Rhsim01G0020900 Rhododendron simsii HOM05D002727 ORTHO05D002856 1.7e-23 113.6 176 38.1
Prupe.1G100600 Prunus persica HOM05D002727 ORTHO05D002856 3.0e-23 112.8 123 47.2
Rhsim01G0017200 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.7e-16 89.7 63 63.5
Rhsim01G0018500 Rhododendron simsii HOM05D002727 ORTHO05D002856 2.7e-16 89.7 63 63.5
TWI34G1383 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 2.7e-16 89.7 124 43.5
Manes.09G062812 Manihot esculenta HOM05D013024 ORTHO05D015548 1.5e-14 84.0 112 42.9
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 3.6e-13 79.3 120 37.5
Thecc.09G157300 Theobroma cacao HOM05D013024 ORTHO05D015548 6.2e-13 78.6 106 38.7
ATR0012G059 Amborella trichopoda HOM05D002727 ORTHO05D002856 8.1e-13 78.2 100 48.0
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.4e-12 77.4 116 34.5
CANSAT11G2620 Cannabis sativa HOM05D013024 ORTHO05D015548 1.8e-12 77.0 106 42.5
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 4.0e-12 75.9 120 36.7
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 6.8e-12 75.1 118 33.1
Eucgr.G02208 Eucalyptus grandis HOM05D002727 ORTHO05D002856 6.8e-12 75.1 117 34.2
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 6.8e-12 75.1 123 43.1
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.8e-12 75.1 123 43.1
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 6.8e-12 75.1 120 38.3
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-11 74.3 123 42.3
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 1.2e-11 74.3 120 34.2
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 1.2e-11 74.3 122 42.6
Thecc.09G156200 Theobroma cacao HOM05D013024 ORTHO05D015548 1.2e-11 74.3 103 38.8
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 1.5e-11 73.9 119 35.3
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 2.0e-11 73.6 116 33.6
Thecc.09G156700 Theobroma cacao HOM05D013024 ORTHO05D015548 2.6e-11 73.2 103 38.8
CANSAT21G1445 Cannabis sativa HOM05D013024 ORTHO05D015548 3.4e-11 72.8 104 41.3
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 3.4e-11 72.8 103 42.7
Haze_14633 Corylus avellana HOM05D013024 ORTHO05D015548 3.4e-11 72.8 119 42.0
Atru.chr11.406 Acer truncatum HOM05D002727 ORTHO05D002856 5.8e-11 72.0 120 35.8
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 7.6e-11 71.6 126 34.9
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 1.3e-10 70.9 122 39.3
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 1.3e-10 70.9 120 35.8
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 1.3e-10 70.9 121 39.7
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 1.3e-10 70.9 103 39.8
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 2.2e-10 70.1 120 36.7
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 2.2e-10 70.1 120 35.0
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 2.2e-10 70.1 120 37.5
Aqoxy1G00996 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 2.9e-10 69.7 121 37.2
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 2.9e-10 69.7 120 36.7
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 2.9e-10 69.7 123 37.4
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 2.9e-10 69.7 120 34.2
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 4.9e-10 68.9 119 35.3
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 4.9e-10 68.9 121 38.0
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 4.9e-10 68.9 118 33.9
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.9e-10 68.9 123 40.7
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 6.4e-10 68.6 120 36.7
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 6.4e-10 68.6 117 34.2
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 8.4e-10 68.2 119 32.8
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 8.4e-10 68.2 120 33.3
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 8.4e-10 68.2 120 38.3
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 8.4e-10 68.2 120 38.3
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 1.1e-09 67.8 123 35.8
Cpa.g.sc199.5 Carica papaya HOM05D013024 ORTHO05D015548 1.4e-09 67.4 123 39.0
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 1.4e-09 67.4 120 37.5
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.4e-09 67.4 120 35.0
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 1.9e-09 67.0 102 40.2
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 3.2e-09 66.2 145 30.3
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 3.2e-09 66.2 120 34.2
FvH4_6g20740 Fragaria vesca HOM05D002727 ORTHO05D002856 3.2e-09 66.2 103 38.8
FAN14G2593 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.2e-09 66.2 103 38.8
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 3.2e-09 66.2 121 37.2
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 5.4e-09 65.5 121 34.7
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 5.4e-09 65.5 118 33.9
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 5.4e-09 65.5 119 32.8
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 7.1e-09 65.1 103 36.9
RcHm_v2.0_Chr2g0175581 Rosa chinensis HOM05D002727 ORTHO05D002856 7.1e-09 65.1 104 38.5
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 1.2e-08 64.3 124 34.7
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 1.2e-08 64.3 124 34.7
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 1.2e-08 64.3 124 34.7
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.2e-08 64.3 100 36.0
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 1.2e-08 64.3 142 33.1
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 1.6e-08 63.9 124 35.5
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 1.6e-08 63.9 124 34.7
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 1.6e-08 63.9 102 36.3
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 1.6e-08 63.9 117 32.5
TPR.G24442 Trifolium pratense HOM05D002727 ORTHO05D002856 1.6e-08 63.9 120 35.0
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 2.1e-08 63.5 142 28.9
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 2.1e-08 63.5 121 33.1
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 2.7e-08 63.2 102 35.3
Psat2g129760 Pisum sativum HOM05D002727 ORTHO05D002856 2.7e-08 63.2 120 33.3
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 3.5e-08 62.8 120 31.7
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 3.5e-08 62.8 108 35.2
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 3.5e-08 62.8 120 34.2
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 4.6e-08 62.4 120 32.5
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.0e-08 62.0 120 33.3
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 6.0e-08 62.0 102 36.3
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 6.0e-08 62.0 121 32.2
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 7.8e-08 61.6 131 33.6
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 7.8e-08 61.6 131 33.6
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 7.8e-08 61.6 159 28.9
unitig_26.g9074 Utricularia gibba HOM05D002727 ORTHO05D002856 7.8e-08 61.6 103 39.8
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 7.8e-08 61.6 109 38.5
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 1.0e-07 61.2 114 31.6
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 1.0e-07 61.2 121 33.1
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 1.3e-07 60.8 100 35.0
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 1.3e-07 60.8 117 32.5
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 1.3e-07 60.8 120 32.5
FAN02G0051 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.7e-07 60.5 103 36.9
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.7e-07 60.5 120 32.5
FAN06G1995 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.3e-07 60.1 121 33.1
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.3e-07 60.1 121 33.1
AT5G40940 Arabidopsis thaliana HOM05D002727 ORTHO05D002856 3.0e-07 59.7 117 30.8
FvH4_6g53540 Fragaria vesca HOM05D002727 ORTHO05D002856 3.0e-07 59.7 101 36.6
FAN05G4306 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.0e-07 59.7 101 36.6
FAN05G5197 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.0e-07 59.7 102 34.3
FAN14G5438 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.0e-07 59.7 101 36.6
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 3.9e-07 59.3 136 30.9
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 5.1e-07 58.9 119 32.8
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 5.1e-07 58.9 109 34.9
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 5.1e-07 58.9 125 31.2
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 6.6e-07 58.5 121 31.4
FAN05G5380 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.6e-07 58.5 102 34.3
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.6e-07 58.5 120 32.5
Cpa.g.sc65.122 Carica papaya HOM05D002727 ORTHO05D002856 8.7e-07 58.2 100 35.0
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 8.7e-07 58.2 121 31.4
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.1e-06 57.8 146 31.5
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.1e-06 57.8 147 30.6
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.1e-06 57.8 120 30.8
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 1.1e-06 57.8 129 31.8
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 1.5e-06 57.4 119 31.9
Medtr4g084160 Medicago truncatula HOM05D002727 ORTHO05D002856 1.5e-06 57.4 120 31.7
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.9e-06 57.0 99 35.4
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 1.9e-06 57.0 116 30.2
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 1.9e-06 57.0 103 34.0
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 4.3e-06 55.8 103 35.9
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 4.3e-06 55.8 103 34.0
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 4.3e-06 55.8 96 40.6
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 5.6e-06 55.5 112 33.0
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 5.6e-06 55.5 100 37.0
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 7.3e-06 55.1 105 32.4


User provided reference genes

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