Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 2.3e-65 251.9 111 100.0
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 8.1e-39 163.7 111 70.3
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 1.4e-38 162.9 105 72.4
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 1.8e-38 162.5 111 68.5
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 2.4e-38 162.2 105 70.5
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 5.3e-38 161.0 110 70.0
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 6.9e-38 160.6 103 71.8
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 9.0e-38 160.2 103 70.9
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 1.5e-37 159.5 111 69.4
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.5e-37 159.5 105 69.5
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.5e-37 159.5 111 71.2
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 2.0e-37 159.1 103 69.9
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.4e-37 158.3 110 69.1
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 3.4e-37 158.3 111 67.6
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 4.5e-37 157.9 110 69.1
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 4.5e-37 157.9 107 68.2
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 4.5e-37 157.9 107 68.2
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 9.9e-37 156.8 109 68.8
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 9.9e-37 156.8 109 69.7
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 9.9e-37 156.8 108 69.4
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 2.2e-36 155.6 111 67.6
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 2.2e-36 155.6 105 68.6
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 3.8e-36 154.8 103 68.9
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 3.8e-36 154.8 103 68.9
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 3.8e-36 154.8 103 68.9
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 3.8e-36 154.8 111 67.6
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 4.9e-36 154.5 109 67.0
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 4.9e-36 154.5 109 68.8
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 4.9e-36 154.5 111 66.7
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 6.4e-36 154.1 103 68.0
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 6.4e-36 154.1 109 68.8
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 6.4e-36 154.1 109 68.8
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.4e-36 153.7 104 68.3
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 8.4e-36 153.7 111 67.6
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 1.1e-35 153.3 105 68.6
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.4e-35 152.9 109 67.9
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 1.9e-35 152.5 110 66.4
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 1.9e-35 152.5 100 69.0
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 2.4e-35 152.1 107 66.4
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 2.4e-35 152.1 107 66.4
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 2.4e-35 152.1 109 68.8
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 3.2e-35 151.8 103 69.9
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 3.2e-35 151.8 105 68.6
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 5.4e-35 151.0 108 67.6
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 5.4e-35 151.0 100 68.0
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 7.1e-35 150.6 109 66.1
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 9.3e-35 150.2 108 65.7
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 1.2e-34 149.8 101 68.3
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 1.2e-34 149.8 111 66.7
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 1.2e-34 149.8 109 65.1
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 1.2e-34 149.8 109 67.0
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.2e-34 149.8 109 67.0
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.6e-34 149.4 104 67.3
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 2.1e-34 149.1 102 67.6
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 3.5e-34 148.3 107 67.3
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 3.5e-34 148.3 103 67.0
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.0e-33 146.7 108 64.8
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 1.0e-33 146.7 109 66.1
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 1.3e-33 146.4 109 65.1
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.8e-33 146.0 109 66.1
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 1.8e-33 146.0 108 66.7
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 1.8e-33 146.0 108 66.7
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 3.0e-33 145.2 101 65.3
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 1.1e-32 143.3 113 65.5
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 1.1e-32 143.3 104 65.4
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 1.5e-32 142.9 109 65.1
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.5e-32 142.9 105 64.8
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 1.9e-32 142.5 113 64.6
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 1.9e-32 142.5 103 64.1
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 1.9e-32 142.5 103 64.1
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 1.9e-32 142.5 103 64.1
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 1.9e-32 142.5 103 64.1
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 1.9e-32 142.5 103 65.0
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.9e-32 142.5 110 63.6
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 2.5e-32 142.1 109 66.1
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 2.5e-32 142.1 109 66.1
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 2.5e-32 142.1 109 66.1
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 2.5e-32 142.1 109 66.1
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 5.6e-32 141.0 109 65.1
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 7.4e-32 140.6 109 65.1
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 7.4e-32 140.6 109 65.1
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 7.4e-32 140.6 109 65.1
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 9.6e-32 140.2 108 64.8
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 9.6e-32 140.2 106 60.4
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 2.1e-31 139.0 108 63.9
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 2.1e-31 139.0 108 63.9
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 2.1e-31 139.0 108 63.9
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 2.1e-31 139.0 108 65.7
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 2.8e-31 138.7 110 61.8
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 4.8e-31 137.9 104 64.4
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.1e-31 137.1 64 89.1
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 3.1e-30 135.2 103 61.2
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 3.1e-30 135.2 64 90.6
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.0e-29 132.5 104 61.5
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 2.0e-29 132.5 63 88.9
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 2.6e-29 132.1 64 87.5
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 2.6e-29 132.1 101 61.4
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 5.8e-29 131.0 104 60.6
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 9.9e-29 130.2 64 81.2
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 6.4e-28 127.5 105 61.0
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 1.1e-27 126.7 98 59.2
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 1.9e-27 125.9 104 59.6
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 7.9e-26 120.6 61 83.6
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 6.0e-18 94.4 75 58.7
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 3.3e-16 88.6 74 60.8
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 7.4e-16 87.4 93 45.2
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 1.3e-12 76.6 84 44.0
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.9e-12 75.5 39 82.1
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.2e-11 71.6 35 85.7
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 7.2e-11 70.9 39 74.4
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.4e-09 66.6 39 76.9
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 2.3e-09 65.9 79 43.0
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 5.7e-08 61.2 38 68.4


User provided reference genes

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