Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12166 Nelumbo nucifera HOM05D000311 ORTHO05D025118 2.0e-108 396.4 291 100.0
CSS0014002 Camellia sinensis var. sinensis HOM05D000311 ORTHO05D000183 8.4e-19 98.6 279 30.8
MBI14_g38255_MAGBIO Magnolia biondii HOM05D000053 ORTHO05D011302 4.3e-15 86.3 226 32.3
Nn8g39596 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.2e-12 78.2 58 63.8
COL.COLO4_11885 Corchorus olitorius HOM05D000311 ORTHO05D000183 1.0e-11 75.1 291 25.4
TAR383G0953 Trochodendron aralioides HOM05D000153 ORTHO05D000118 2.2e-11 73.9 65 58.5
Ciclev10027344m.g Citrus clementina HOM05D000311 ORTHO05D000183 1.1e-10 71.6 69 47.8
Ciclev10013923m.g Citrus clementina HOM05D029986 ORTHO05D025118 4.2e-10 69.7 64 53.1
Haze_20328 Corylus avellana HOM05D000311 ORTHO05D000183 1.2e-09 68.2 122 36.1
MBI18_g12152_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 1.6e-09 67.8 63 54.0
MBI18_g17393_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 1.6e-09 67.8 65 50.8
VMungo0720G1122 Vigna mungo HOM05D000311 ORTHO05D000183 3.5e-09 66.6 253 31.6
Nn8g39655 Nelumbo nucifera HOM05D000311 ORTHO05D000183 4.6e-09 66.2 65 53.8
AL3G12670 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 7.9e-09 65.5 68 47.1
AL1G17310 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.0e-08 65.1 68 47.1
HanXRQChr04g0097701 Helianthus annuus HOM05D000311 ORTHO05D000183 1.3e-08 64.7 73 49.3
BcaNung00102 Brassica carinata HOM05D000311 ORTHO05D000183 3.0e-08 63.5 67 47.8
Oeu029749.1 Olea europaea HOM05D000311 ORTHO05D000183 3.0e-08 63.5 83 45.8
Gohir.D02G072850 Gossypium hirsutum HOM05D000311 ORTHO05D000183 3.9e-08 63.2 244 36.5
COL.COLO4_11857 Corchorus olitorius HOM05D000311 ORTHO05D000183 5.1e-08 62.8 126 34.1
QL05p085204 Quercus lobata HOM05D000311 ORTHO05D000183 6.7e-08 62.4 178 52.2
BolC8t52591H Brassica oleracea HOM05D000311 ORTHO05D000183 1.5e-07 61.2 194 42.3
COL.COLO4_11886 Corchorus olitorius HOM05D000311 ORTHO05D000183 1.5e-07 61.2 59 47.5
HanXRQChr04g0097591 Helianthus annuus HOM05D000311 ORTHO05D000183 1.5e-07 61.2 79 43.0
Thecc.06G032600 Theobroma cacao HOM05D000311 ORTHO05D000183 1.9e-07 60.8 255 48.6
Gorai.005G031900 Gossypium raimondii HOM05D000311 ORTHO05D000183 3.3e-07 60.1 80 46.2
Nn2g15969 Nelumbo nucifera HOM05D000053 ORTHO05D000183 4.3e-07 59.7 117 34.2
Nitab4.5_0006696g0030 Nicotiana tabacum HOM05D000311 ORTHO05D000183 4.3e-07 59.7 57 50.9
VMungo0720G0904 Vigna mungo HOM05D000311 ORTHO05D000183 4.3e-07 59.7 256 31.6
Phvul.005G077100 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 9.6e-07 58.5 134 50.7
PGR064G0010 Punica granatum HOM05D000311 ORTHO05D000183 9.6e-07 58.5 66 45.5
PGR119G0542 Punica granatum HOM05D000311 ORTHO05D000183 9.6e-07 58.5 66 45.5
QL05p085350 Quercus lobata HOM05D000311 ORTHO05D000183 1.3e-06 58.2 181 48.6
C06p48370 Brassica napus HOM05D000311 ORTHO05D000183 1.6e-06 57.8 67 37.3
Gohir.D05G375550 Gossypium hirsutum HOM05D000053 ORTHO05D000035 1.6e-06 57.8 84 42.9
PGR064G0015 Punica granatum HOM05D000311 ORTHO05D000183 1.6e-06 57.8 66 47.0
BcaB01g05211 Brassica carinata HOM05D001733 ORTHO05D000183 2.1e-06 57.4 274 44.5
Gohir.D01G042734 Gossypium hirsutum HOM05D000053 ORTHO05D000035 2.1e-06 57.4 82 40.2
C04p51910 Brassica napus HOM05D000311 ORTHO05D000183 2.8e-06 57.0 50 54.0
BolC6t38339H Brassica oleracea HOM05D000311 ORTHO05D000183 2.8e-06 57.0 67 40.3
CiPaw.12G000700 Carya illinoinensis HOM05D000311 ORTHO05D000183 2.8e-06 57.0 84 44.0
CiPaw.12G006800 Carya illinoinensis HOM05D000311 ORTHO05D000183 3.7e-06 56.6 52 53.8
COL.COLO4_34812 Corchorus olitorius HOM05D000311 ORTHO05D000183 3.7e-06 56.6 68 48.5
Duzib138G0804 Durio zibethinus HOM05D000053 ORTHO05D000035 3.7e-06 56.6 197 49.2
Gohir.D01G042742 Gossypium hirsutum HOM05D000053 ORTHO05D000035 3.7e-06 56.6 82 39.0
Gorai.002G060400 Gossypium raimondii HOM05D000053 ORTHO05D000035 3.7e-06 56.6 82 39.0
Gorai.012G068800 Gossypium raimondii HOM05D000311 ORTHO05D000183 3.7e-06 56.6 249 35.3
Carub.0004s0513 Capsella rubella HOM05D000311 ORTHO05D000183 4.8e-06 56.2 62 41.9
CAN.G572.27 Capsicum annuum HOM05D000053 ORTHO05D000035 4.8e-06 56.2 83 41.0
Duzib089G0001 Durio zibethinus HOM05D000053 ORTHO05D000035 4.8e-06 56.2 212 26.4
QL09p041717 Quercus lobata HOM05D000071 ORTHO05D000029 6.2e-06 55.8 128 33.6
QL09p041755 Quercus lobata HOM05D000071 ORTHO05D000029 6.2e-06 55.8 128 33.6
Atru.chr12.2416 Acer truncatum HOM05D000311 ORTHO05D000183 8.2e-06 55.5 70 44.3
ATR0598G293 Amborella trichopoda HOM05D017909 ORTHO05D012563 8.2e-06 55.5 198 41.9
Gohir.D05G375900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 8.2e-06 55.5 71 45.1
PGSC0003DMG400001831 Solanum tuberosum HOM05D000053 ORTHO05D000035 8.2e-06 55.5 83 42.2


User provided reference genes

Program Settings