Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 9.5e-113 410.2 211 100.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.9e-89 332.8 208 78.4
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.3e-89 332.0 207 79.7
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.6e-88 329.7 209 79.4
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 3.1e-87 325.5 209 78.5
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 5.2e-87 324.7 191 83.2
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 6.8e-87 324.3 210 76.2
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 8.9e-87 323.9 198 80.3
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.4e-86 321.6 191 82.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 9.9e-86 320.5 209 76.6
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.3e-85 320.1 190 81.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.7e-85 319.7 204 77.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.7e-85 319.7 209 75.1
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 6.4e-85 317.8 191 81.7
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.9e-84 316.2 210 74.3
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 2.4e-84 315.8 212 74.1
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.2e-83 313.5 206 76.7
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.1e-83 312.8 197 75.6
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.5e-83 312.0 203 75.9
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 3.5e-83 312.0 182 81.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 4.6e-83 311.6 212 72.2
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.6e-83 311.6 190 78.9
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 7.8e-83 310.8 189 79.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 7.8e-83 310.8 211 72.5
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.7e-82 309.7 204 75.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.3e-82 309.3 212 74.1
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 3.0e-82 308.9 201 75.6
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 5.1e-82 308.1 212 72.6
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.1e-82 308.1 212 72.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 5.1e-82 308.1 211 73.0
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.6e-82 307.8 211 73.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.6e-82 307.8 211 73.5
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 6.6e-82 307.8 213 70.9
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.6e-82 307.4 192 77.6
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 1.1e-81 307.0 204 75.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.5e-81 306.6 210 71.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.5e-81 306.6 201 74.6
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.3e-81 305.4 196 75.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 3.3e-81 305.4 214 73.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 3.3e-81 305.4 207 72.5
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 4.3e-81 305.1 207 74.4
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 4.3e-81 305.1 184 81.5
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.6e-81 304.7 202 72.3
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 9.6e-81 303.9 178 80.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.2e-80 303.5 216 70.4
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.1e-80 302.8 180 78.3
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 3.6e-80 302.0 200 76.5
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 3.6e-80 302.0 205 72.2
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 4.7e-80 301.6 202 71.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 8.1e-80 300.8 203 71.9
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.1e-79 300.4 207 71.5
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.1e-79 298.9 210 70.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.1e-79 298.9 204 71.1
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.1e-79 298.9 201 74.1
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.1e-79 298.9 225 67.6
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 4.0e-79 298.5 208 72.1
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 5.2e-79 298.1 202 74.8
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 6.8e-79 297.7 188 75.5
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 6.8e-79 297.7 211 70.1
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 2.6e-78 295.8 211 68.2
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 9.9e-78 293.9 207 70.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.2e-77 292.7 198 73.2
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 3.8e-77 292.0 204 72.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 1.4e-76 290.0 205 70.7
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 2.4e-76 289.3 207 71.0
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 9.3e-76 287.3 213 70.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 9.3e-76 287.3 194 69.6
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.2e-75 287.0 208 68.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.7e-75 285.8 208 71.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 2.7e-75 285.8 202 71.3
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 4.6e-75 285.0 208 71.6
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.8e-75 284.3 207 70.0
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.0e-74 283.9 296 53.7
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.7e-74 283.1 207 69.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.3e-74 282.7 159 85.5
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.1e-73 280.4 208 67.8
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.5e-73 280.0 208 69.7
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.5e-73 279.3 207 68.1
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.6e-73 278.1 200 69.0
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.1e-72 276.2 161 80.7
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 3.6e-72 275.4 196 69.9
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.6e-72 275.4 207 68.6
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.8e-72 275.0 207 68.6
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 6.2e-72 274.6 225 63.1
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.4e-71 272.7 200 68.0
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.1e-71 272.3 207 66.2
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 6.9e-71 271.2 201 66.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.0e-71 270.8 194 68.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 9.0e-71 270.8 208 65.9
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.2e-70 270.4 194 67.5
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-70 270.0 202 65.8
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.4e-70 268.9 202 67.8
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.4e-70 268.9 211 67.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.3e-69 266.9 200 65.5
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.7e-69 266.5 207 65.7
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 211 66.8
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 4.9e-69 265.0 198 67.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 8.4e-69 264.2 199 68.3
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.1e-68 263.8 208 64.9
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 3.2e-68 262.3 207 63.8
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 3.2e-68 262.3 199 63.8
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.2e-68 261.9 204 65.7
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 9.3e-68 260.8 200 64.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 1.6e-67 260.0 217 65.0
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.7e-67 259.2 199 64.8
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 3.5e-67 258.8 217 64.5
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 4.6e-67 258.5 202 65.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.0e-67 258.1 210 62.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.0e-66 257.3 210 62.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.3e-66 256.9 206 65.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.0e-66 255.8 208 63.0
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 6.6e-66 254.6 174 70.1
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.3e-65 251.9 209 62.2
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.6e-65 251.5 203 65.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.6e-65 251.5 158 79.7
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.1e-64 249.6 180 69.4
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.8e-64 249.2 174 67.8
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 4.8e-64 248.4 181 68.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.1e-63 245.7 169 71.6
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 6.9e-63 244.6 170 67.6
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 9.0e-63 244.2 180 67.8
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 6.0e-59 231.5 170 70.6
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.8e-55 219.9 196 56.1
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 9.0e-55 217.6 203 57.6
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 9.0e-55 217.6 126 80.2
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.3e-53 213.8 124 80.6
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.5e-52 208.4 126 77.8
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-48 196.8 154 66.2
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.1e-47 194.1 201 54.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 2.6e-46 189.5 170 54.7
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.6e-46 189.5 191 52.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.8e-46 188.3 191 55.0
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.1e-44 184.1 150 58.7
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.4e-44 183.7 120 70.8
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 7.9e-43 177.9 97 86.6
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-42 177.2 168 54.8
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.3e-42 176.4 110 79.1
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 3.0e-42 176.0 104 81.7
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 9.7e-41 171.0 96 79.2
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.4e-36 157.1 149 52.3
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.5e-36 155.2 173 52.0
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 9.4e-36 154.5 183 44.3
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 1.4e-31 140.6 112 62.5
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 8.5e-21 104.8 98 59.2
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.3e-18 96.7 72 62.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.3e-18 96.7 179 35.8
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.0e-18 95.9 213 36.2
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 6.7e-18 95.1 78 56.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 8.8e-18 94.7 72 61.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 1.1e-17 94.4 76 59.2
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 2.4e-15 86.7 186 36.0
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 1.5e-12 77.4 62 66.1
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 5.5e-12 75.5 91 45.1
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.3e-10 70.1 40 85.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 8.8e-10 68.2 56 58.9
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 4.5e-06 55.8 37 67.6


User provided reference genes

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