Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12150 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.6e-49 198.7 129 100.0
Nn4g23899 Nelumbo nucifera HOM05D006310 ORTHO05D007768 8.0e-14 80.9 49 79.6
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 1.2e-12 77.0 46 73.9
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 1.2e-12 77.0 46 73.9
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 2.0e-12 76.3 50 70.0
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.3e-11 73.6 45 75.6
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.7e-11 73.2 45 71.1
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.7e-11 73.2 52 71.2
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 2.2e-11 72.8 96 72.9
SEGI_41011 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 2.9e-11 72.4 48 66.7
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 2.9e-11 72.4 45 71.1
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 1.1e-10 70.5 49 65.3
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 4.1e-10 68.6 52 67.3
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 9.2e-10 67.4 48 60.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.6e-09 66.6 48 60.4
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.6e-09 66.6 38 73.7
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.7e-09 65.9 49 61.2
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.0e-08 63.9 49 53.1
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.0e-08 63.9 38 78.9
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.0e-08 63.9 43 67.4
AUR62018697 Chenopodium quinoa HOM05D006310 ORTHO05D007768 1.7e-08 63.2 40 72.5
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.3e-08 62.8 40 70.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.0e-08 62.4 33 78.8
arahy.Tifrunner.gnm1.ann1.6P54CG Arachis hypogaea HOM05D001903 ORTHO05D001847 5.0e-08 61.6 49 57.1
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 5.0e-08 61.6 37 73.0
Nitab4.5_0000373g0030 Nicotiana tabacum HOM05D001903 ORTHO05D001847 5.0e-08 61.6 48 58.3
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 8.6e-08 60.8 56 50.0
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 8.6e-08 60.8 37 70.3
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.1e-07 60.5 38 73.7
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.1e-07 60.5 47 55.3
COL.COLO4_24106 Corchorus olitorius HOM05D031544 ORTHO05D007768 1.9e-07 59.7 34 73.5
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 2.5e-07 59.3 34 73.5
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.5e-07 59.3 49 51.0
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 3.3e-07 58.9 38 65.8
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 4.3e-07 58.5 32 78.1
arahy.Tifrunner.gnm1.ann1.ZC4B2S Arachis hypogaea HOM05D001903 ORTHO05D001847 5.6e-07 58.2 47 55.3
AUR62012392 Chenopodium quinoa HOM05D001903 ORTHO05D001847 5.6e-07 58.2 49 59.2
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 5.6e-07 58.2 31 80.6
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.6e-07 58.2 31 80.6
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.6e-07 58.2 31 80.6
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 9.5e-07 57.4 109 32.1
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 9.5e-07 57.4 31 83.9
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 9.5e-07 57.4 31 83.9
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 9.5e-07 57.4 49 55.1
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 1.2e-06 57.0 94 35.1
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.2e-06 57.0 35 71.4
MD15G1171400 Malus domestica HOM05D001903 ORTHO05D001847 1.2e-06 57.0 46 56.5
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.6e-06 56.6 31 80.6
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.6e-06 56.6 48 54.2
Carub.0002s2739 Capsella rubella HOM05D001903 ORTHO05D001847 2.1e-06 56.2 94 55.3
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 2.1e-06 56.2 31 80.6
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 2.1e-06 56.2 30 80.0
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 2.1e-06 56.2 48 54.2
CARHR074370 Cardamine hirsuta HOM05D001903 ORTHO05D001847 2.8e-06 55.8 112 54.5
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 2.8e-06 55.8 48 50.0
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.6e-06 55.5 31 77.4
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 3.6e-06 55.5 59 47.5
Sp5g35670 Schrenkiella parvula HOM05D001903 ORTHO05D001847 3.6e-06 55.5 106 50.0
Sc08g0006520 Simmondsia chinensis HOM05D001903 ORTHO05D001847 3.6e-06 55.5 44 56.8
BcaB02g08699 Brassica carinata HOM05D001903 ORTHO05D001847 4.7e-06 55.1 112 56.2
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 4.7e-06 55.1 31 77.4
SEGI_20120 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 4.7e-06 55.1 36 61.1
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 6.2e-06 54.7 31 77.4
Migut.D01072 Erythranthe guttata HOM05D001903 ORTHO05D001847 6.2e-06 54.7 38 63.2
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 6.2e-06 54.7 31 77.4
Sabra18G0110600 Salix brachista HOM05D001903 ORTHO05D001847 6.2e-06 54.7 46 54.3
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.1e-06 54.3 31 77.4
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 8.1e-06 54.3 31 77.4
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 8.1e-06 54.3 31 77.4
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 8.1e-06 54.3 49 55.1
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 8.1e-06 54.3 31 77.4


User provided reference genes

Program Settings