Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 9.0e-148 526.9 274 100.0
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 1.3e-82 310.5 292 61.6
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 2.0e-78 296.6 270 61.1
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 2.6e-78 296.2 282 61.0
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 2.6e-78 296.2 299 57.5
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 9.8e-78 294.3 289 58.5
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 4.9e-77 292.0 284 58.1
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 9.2e-76 287.7 258 61.6
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 3.5e-75 285.8 259 61.8
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 4.6e-75 285.4 298 56.0
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 4.6e-75 285.4 298 56.0
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 7.8e-75 284.6 280 56.4
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 1.1e-73 280.8 273 55.3
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.5e-73 279.6 288 57.3
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 1.2e-72 277.3 281 55.2
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 2.1e-72 276.6 268 57.1
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 2.8e-72 276.2 269 56.1
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 8.1e-72 274.6 268 56.7
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 1.8e-71 273.5 295 55.6
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 3.1e-71 272.7 280 56.8
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 4.4e-70 268.9 284 54.6
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 1.4e-68 263.8 266 57.1
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 9.2e-68 261.2 294 53.7
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 1.6e-67 260.4 280 52.1
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 2.7e-67 259.6 282 53.2
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 2.7e-67 259.6 222 61.3
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 2.7e-67 259.6 223 61.4
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 2.7e-67 259.6 294 53.1
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 4.6e-67 258.8 264 55.3
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 1.0e-66 257.7 255 56.9
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 1.0e-66 257.7 282 51.8
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 1.7e-66 256.9 295 52.2
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 2.3e-66 256.5 292 53.8
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 8.6e-66 254.6 270 54.8
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 1.1e-65 254.2 223 62.3
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 1.9e-65 253.4 267 55.1
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 2.5e-65 253.1 264 55.3
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 4.7e-64 248.8 270 52.6
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 8.9e-63 244.6 272 52.6
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 1.5e-62 243.8 257 54.9
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 2.6e-62 243.0 279 52.7
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 3.4e-62 242.7 234 56.0
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 4.4e-62 242.3 234 56.0
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 5.8e-62 241.9 234 56.0
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 4.9e-61 238.8 268 52.6
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 1.4e-60 237.3 268 52.2
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 3.2e-60 236.1 215 58.6
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 3.5e-59 232.6 225 56.4
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 1.5e-57 227.3 297 46.8
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 1.9e-57 226.9 215 55.8
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 1.9e-57 226.9 277 48.7
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 1.9e-57 226.9 267 48.7
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 3.3e-57 226.1 215 57.2
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 5.6e-57 225.3 299 46.2
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 7.3e-57 224.9 269 49.8
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 6.2e-56 221.9 233 53.6
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 8.1e-56 221.5 278 46.0
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 8.1e-56 221.5 210 57.6
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 1.4e-55 220.7 258 53.1
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 2.4e-55 219.9 261 51.7
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 1.7e-53 213.8 295 43.7
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 6.4e-53 211.8 245 50.2
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 9.3e-52 208.0 237 52.3
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 7.8e-51 204.9 260 48.5
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 8.7e-50 201.4 238 51.7
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 1.9e-49 200.3 178 59.6
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 5.8e-46 188.7 180 56.7
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 5.8e-46 188.7 243 49.4
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 4.2e-44 182.6 253 44.3
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 1.4e-36 157.5 219 42.5
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 4.6e-35 152.5 214 45.3
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 6.0e-35 152.1 116 64.7
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 1.7e-21 107.5 94 54.3
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 4.2e-20 102.8 94 54.3
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 6.1e-19 99.0 209 33.0
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 6.1e-19 99.0 209 33.0
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 7.9e-19 98.6 209 33.0
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 7.9e-19 98.6 204 31.4
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.0e-18 98.2 204 31.4
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 3.0e-18 96.7 209 32.1
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 8.8e-18 95.1 209 31.6
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 1.5e-17 94.4 234 34.6
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 2.8e-16 90.1 209 31.6
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 2.8e-16 90.1 209 31.6
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 1.4e-15 87.8 243 30.5
C03p75300 Brassica napus HOM05D002526 ORTHO05D010157 8.8e-10 68.6 243 28.4
AagrBONN_evm.TU.Sc2ySwM_117.3641 Anthoceros agrestis HOM05D000382 ORTHO05D000623 1.7e-08 64.3 217 27.6
BolC3t19789H Brassica oleracea HOM05D002526 ORTHO05D010157 1.5e-06 57.8 90 43.3
AUR62006900 Chenopodium quinoa HOM05D000828 ORTHO05D000623 4.5e-06 56.2 178 26.4
AUR62000548 Chenopodium quinoa HOM05D000828 ORTHO05D000623 7.7e-06 55.5 202 27.2


User provided reference genes

Program Settings