Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 2.2e-59 232.6 170 100.0
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 2.0e-41 172.9 222 66.2
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 1.1e-39 167.2 165 75.2
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.1e-39 167.2 216 66.7
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.2e-38 163.7 157 79.0
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 1.2e-38 163.7 165 73.9
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 1.6e-38 163.3 167 75.4
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 1.6e-38 163.3 142 81.7
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 2.1e-38 162.9 159 78.0
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 4.7e-38 161.8 142 81.7
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 4.7e-38 161.8 142 79.6
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 6.2e-38 161.4 171 73.1
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 6.2e-38 161.4 167 76.0
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 6.2e-38 161.4 167 76.0
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 6.2e-38 161.4 167 76.0
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.4e-37 160.2 143 64.3
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 1.8e-37 159.8 164 74.4
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 1.8e-37 159.8 165 73.9
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 2.3e-37 159.5 166 77.1
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 2.3e-37 159.5 166 74.7
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 3.1e-37 159.1 219 60.7
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 5.2e-37 158.3 163 76.1
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 6.8e-37 157.9 217 63.6
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 8.9e-37 157.5 160 71.2
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.2e-36 157.1 167 79.0
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.2e-36 157.1 167 79.0
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.5e-36 156.8 152 71.7
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 2.0e-36 156.4 160 71.2
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 3.4e-36 155.6 169 74.0
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 3.4e-36 155.6 164 74.4
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 3.4e-36 155.6 166 78.9
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 4.4e-36 155.2 160 66.9
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 5.8e-36 154.8 142 77.5
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 7.5e-36 154.5 142 80.3
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 1.3e-35 153.7 170 72.9
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.3e-35 153.7 162 78.4
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 1.3e-35 153.7 151 73.5
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 1.7e-35 153.3 163 73.6
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.7e-35 153.3 209 63.6
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 2.2e-35 152.9 171 73.7
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 2.2e-35 152.9 151 74.8
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 2.9e-35 152.5 214 62.6
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 2.9e-35 152.5 142 76.1
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 4.9e-35 151.8 168 75.6
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 8.3e-35 151.0 162 71.6
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 1.1e-34 150.6 161 65.2
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.4e-34 150.2 163 74.8
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 1.4e-34 150.2 166 69.9
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 2.4e-34 149.4 162 72.8
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 3.2e-34 149.1 219 60.7
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 4.1e-34 148.7 162 72.8
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 4.1e-34 148.7 162 71.0
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 4.1e-34 148.7 141 80.1
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 4.1e-34 148.7 159 71.1
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 4.1e-34 148.7 142 82.4
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 5.4e-34 148.3 141 85.1
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 5.4e-34 148.3 138 84.8
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 7.1e-34 147.9 163 76.7
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 9.2e-34 147.5 160 69.4
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 9.2e-34 147.5 160 69.4
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 1.2e-33 147.1 164 74.4
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 1.6e-33 146.7 168 67.9
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 3.5e-33 145.6 162 72.2
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 3.5e-33 145.6 160 65.6
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 3.5e-33 145.6 142 76.1
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 4.6e-33 145.2 163 74.2
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 6.0e-33 144.8 210 63.3
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 6.0e-33 144.8 168 67.9
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 7.8e-33 144.4 162 73.5
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 7.8e-33 144.4 165 70.3
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 7.8e-33 144.4 165 70.3
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 1.0e-32 144.1 170 68.2
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 1.3e-32 143.7 141 70.9
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 1.7e-32 143.3 211 60.2
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 5.1e-32 141.7 163 73.0
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 8.6e-32 141.0 172 70.9
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 3.3e-31 139.0 128 71.9
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 9.5e-31 137.5 207 55.6
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 9.5e-31 137.5 155 74.8
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.2e-30 137.1 126 86.5
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 4.7e-30 135.2 211 61.1
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 1.1e-29 134.0 158 74.1
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 1.2e-28 130.6 106 68.9
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 4.4e-28 128.6 106 68.9
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 5.8e-28 128.3 142 76.1
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 2.2e-27 126.3 166 71.1
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 3.8e-27 125.6 138 65.9
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 1.1e-26 124.0 170 68.8
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 1.2e-25 120.6 164 68.3
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 1.2e-25 120.6 141 78.0
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.3e-24 117.1 72 87.5
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 5.1e-24 115.2 210 55.7
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 2.5e-23 112.8 169 43.8
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 5.2e-21 105.1 145 66.9
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 6.9e-21 104.8 169 52.1
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.2e-20 104.0 106 86.8
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 7.6e-20 101.3 107 80.4
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 7.6e-20 101.3 107 72.0
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 7.6e-20 101.3 106 76.4
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 1.7e-19 100.1 141 63.1
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.4e-18 97.1 144 64.6
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.9e-18 96.7 144 64.6
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 7.1e-18 94.7 141 64.5
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.6e-17 93.6 88 56.8
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 2.7e-17 92.8 138 38.4
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 3.5e-17 92.4 56 83.9
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 6.2e-14 81.6 60 71.7
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.4e-13 80.5 84 48.8
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 3.1e-13 79.3 84 46.4
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 7.9e-09 64.7 58 58.6
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.6e-06 57.0 88 50.0
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 8.1e-06 54.7 81 43.2


User provided reference genes

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