Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.0e-60 235.7 133 100.0
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.4e-40 169.9 131 62.6
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.9e-40 168.3 133 63.9
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 5.2e-40 167.9 133 62.4
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 6.7e-40 167.5 133 76.7
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 9.7e-39 163.7 133 69.9
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 6.3e-38 161.0 134 60.4
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-37 160.2 133 58.6
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.1e-37 160.2 133 58.6
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 4.1e-37 158.3 133 57.9
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 9.1e-37 157.1 134 61.9
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 9.1e-37 157.1 134 61.9
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.1e-37 157.1 133 57.9
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 2.0e-36 156.0 133 60.9
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 3.5e-36 155.2 135 67.4
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 4.5e-36 154.8 134 59.0
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 5.9e-36 154.5 133 58.6
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.3e-35 153.3 137 59.1
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.9e-35 152.1 133 59.4
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.8e-35 151.8 133 58.6
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 1.9e-34 149.4 133 57.1
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.9e-34 149.4 134 55.2
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.5e-34 149.1 133 59.4
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 4.2e-34 148.3 133 66.9
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 1.2e-33 146.7 145 53.1
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.2e-33 146.7 133 65.4
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.6e-33 146.4 131 53.4
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 2.7e-33 145.6 133 63.9
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.7e-33 145.6 133 60.2
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 3.6e-33 145.2 136 57.4
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 3.6e-33 145.2 133 63.2
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 4.7e-33 144.8 138 58.0
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 6.1e-33 144.4 133 65.4
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.0e-32 143.7 136 60.3
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 2.3e-32 142.5 131 62.6
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.0e-32 141.7 133 61.7
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 5.2e-32 141.4 130 66.9
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 6.8e-32 141.0 133 56.4
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 8.8e-32 140.6 136 67.6
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 8.8e-32 140.6 136 67.6
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 8.8e-32 140.6 133 64.7
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 2.0e-31 139.4 133 63.9
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.6e-31 139.0 134 55.2
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 7.5e-31 137.5 133 50.4
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.7e-30 136.3 134 60.4
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 2.2e-30 136.0 131 55.0
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 2.2e-30 136.0 135 65.2
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 2.2e-30 136.0 133 58.6
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 2.8e-30 135.6 133 51.1
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 2.8e-30 135.6 138 57.2
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.7e-30 135.2 131 53.4
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.8e-29 132.9 107 66.4
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 1.8e-29 132.9 107 66.4
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 1.8e-29 132.9 134 52.2
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 3.1e-29 132.1 133 50.4
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 3.1e-29 132.1 133 60.2
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 5.3e-29 131.3 133 57.9
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 9.1e-29 130.6 131 61.8
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.1e-29 130.6 131 61.8
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 2.7e-28 129.0 113 58.4
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.7e-28 129.0 131 61.8
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 3.5e-28 128.6 121 55.4
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 4.5e-28 128.3 136 52.2
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 4.5e-28 128.3 133 62.4
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 5.9e-28 127.9 135 54.1
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.7e-27 126.3 140 50.0
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 3.8e-27 125.2 133 48.1
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 5.0e-27 124.8 135 61.5
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 6.5e-27 124.4 133 56.4
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 1.5e-26 123.2 136 48.5
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 4.2e-26 121.7 134 48.5
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 9.4e-26 120.6 140 59.3
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 9.4e-26 120.6 133 58.6
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.7e-25 119.0 117 68.4
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.6e-25 118.6 136 58.8
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 4.7e-25 118.2 135 48.9
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.0e-24 117.1 140 56.4
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 1.0e-24 117.1 133 58.6
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.0e-24 117.1 113 61.9
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 1.8e-24 116.3 136 58.1
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.0e-24 115.5 133 49.6
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 3.0e-24 115.5 133 45.1
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 4.0e-24 115.2 133 48.1
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 4.0e-24 115.2 104 68.3
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 5.2e-24 114.8 103 70.9
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.8e-24 114.4 133 48.9
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 6.8e-24 114.4 138 47.8
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 6.8e-24 114.4 134 50.0
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 6.8e-24 114.4 86 82.6
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 8.8e-24 114.0 143 44.1
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 1.5e-23 113.2 135 54.1
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 1.5e-23 113.2 133 60.2
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 4.4e-23 111.7 135 44.4
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 5.7e-23 111.3 141 45.4
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 5.7e-23 111.3 129 58.9
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 9.8e-23 110.5 140 55.7
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 2.2e-22 109.4 140 54.3
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 2.8e-22 109.0 141 56.7
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 2.8e-22 109.0 144 41.0
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 3.7e-22 108.6 129 58.9
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 6.3e-22 107.8 133 56.4
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 8.3e-22 107.5 87 58.6
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 1.1e-21 107.1 153 42.5
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 9.1e-21 104.0 97 68.0
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 1.6e-20 103.2 96 54.2
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.7e-20 102.4 80 63.8
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 3.5e-20 102.1 131 42.7
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 5.9e-20 101.3 141 46.1
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 5.9e-20 101.3 136 41.2
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 7.7e-20 100.9 133 42.9
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 7.7e-20 100.9 125 54.4
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 1.0e-19 100.5 151 44.4
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.0e-19 100.5 95 56.8
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 1.0e-19 100.5 133 52.6
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 1.7e-19 99.8 136 53.7
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.9e-19 99.0 133 53.4
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 2.9e-19 99.0 106 49.1
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 6.6e-19 97.8 145 41.4
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 6.6e-19 97.8 140 52.9
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 6.6e-19 97.8 132 50.8
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 8.6e-19 97.4 138 52.9
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 1.1e-18 97.1 138 52.9
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.5e-18 96.7 135 51.9
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 1.9e-18 96.3 143 49.7
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 1.9e-18 96.3 106 44.3
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 2.5e-18 95.9 91 49.5
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.2e-18 95.1 142 49.3
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 5.5e-18 94.7 141 49.6
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 5.5e-18 94.7 135 41.5
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 5.5e-18 94.7 142 50.0
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 5.5e-18 94.7 134 50.7
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 5.5e-18 94.7 133 39.1
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.2e-17 93.6 107 47.7
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 1.2e-17 93.6 132 49.2
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 1.2e-17 93.6 80 55.0
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.6e-17 93.2 80 56.2
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.1e-17 92.8 135 44.4
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 2.1e-17 92.8 141 41.8
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 3.6e-17 92.0 125 52.8
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.6e-17 92.0 132 48.5
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.6e-17 92.0 132 48.5
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 3.6e-17 92.0 136 49.3
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 4.7e-17 91.7 131 51.1
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 4.7e-17 91.7 83 68.7
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 8.0e-17 90.9 141 50.4
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 8.0e-17 90.9 141 50.4
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 8.0e-17 90.9 90 51.1
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 1.0e-16 90.5 140 50.7
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 1.0e-16 90.5 139 41.7
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 1.0e-16 90.5 133 42.9
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.0e-16 90.5 133 52.6
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.4e-16 90.1 144 48.6
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.4e-16 90.1 135 51.1
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.8e-16 89.7 72 66.7
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 3.0e-16 89.0 141 49.6
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 3.0e-16 89.0 132 47.7
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 4.0e-16 88.6 67 59.7
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.0e-16 88.6 134 41.8
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 5.2e-16 88.2 133 42.9
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 6.8e-16 87.8 110 41.8
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 6.8e-16 87.8 95 60.0
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 6.8e-16 87.8 59 66.1
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 2.6e-15 85.9 117 42.7
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 3.4e-15 85.5 129 39.5
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 4.4e-15 85.1 77 51.9
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 5.7e-15 84.7 92 59.8
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 9.8e-15 84.0 147 41.5
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 1.3e-14 83.6 95 60.0
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 1.7e-14 83.2 70 52.9
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 8.3e-14 80.9 128 48.4
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 5.4e-13 78.2 60 65.0
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 1.6e-12 76.6 57 61.4
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 2.7e-12 75.9 89 46.1
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.7e-12 75.9 106 40.6
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 3.5e-12 75.5 90 45.6
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 1.0e-11 73.9 144 44.4
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.7e-11 73.2 59 61.0
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.0e-11 71.6 32 93.8
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.6e-11 70.9 104 42.3
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 1.9e-10 69.7 84 46.4
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 3.3e-10 68.9 32 84.4
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 3.3e-10 68.9 32 84.4
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 6.1e-09 64.7 49 69.4


User provided reference genes

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