Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11948 Nelumbo nucifera HOM05D000347 ORTHO05D000694 1.7e-27 125.2 60 100.0
Nn8g39376 Nelumbo nucifera HOM05D000347 ORTHO05D000694 4.6e-12 73.9 50 68.0
TAR636G2285 Trochodendron aralioides HOM05D000347 ORTHO05D000694 6.6e-11 70.1 48 66.7
Dinv41539 Davidia involucrata HOM05D000347 ORTHO05D000694 1.1e-10 69.3 49 63.3
TAR383G0871 Trochodendron aralioides HOM05D000347 ORTHO05D000694 1.9e-10 68.6 45 66.7
Hma1.2p1_0665F.1_g199230 Hydrangea macrophylla HOM05D000347 ORTHO05D000694 2.1e-09 65.1 49 61.2
vmacro20656 Vaccinium macrocarpon HOM05D000347 ORTHO05D000694 1.1e-08 62.8 48 56.2
EL10Ac8g18602 Beta vulgaris HOM05D000347 ORTHO05D000694 1.4e-08 62.4 38 71.1
CiPaw.03G240600 Carya illinoinensis HOM05D000347 ORTHO05D000694 1.8e-08 62.0 51 54.9
Gohir.A05G018600 Gossypium hirsutum HOM05D000347 ORTHO05D000694 1.8e-08 62.0 64 43.8
Gohir.D05G019700 Gossypium hirsutum HOM05D000347 ORTHO05D000694 1.8e-08 62.0 64 45.3
Aqoxy7G03744 Aquilegia oxysepala HOM05D000347 ORTHO05D000694 2.3e-08 61.6 48 56.2
Duzib168G0688 Durio zibethinus HOM05D000347 ORTHO05D000694 2.3e-08 61.6 65 46.2
Gorai.009G019900 Gossypium raimondii HOM05D000347 ORTHO05D000694 3.1e-08 61.2 64 43.8
MBI04_g10417_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D000694 4.0e-08 60.8 48 58.3
Sabra18G0061600 Salix brachista HOM05D000347 ORTHO05D000694 4.0e-08 60.8 51 52.9
TAR626G0229 Trochodendron aralioides HOM05D000347 ORTHO05D000694 4.0e-08 60.8 48 58.3
Potri.018G070500 Populus trichocarpa HOM05D000347 ORTHO05D000694 5.2e-08 60.5 50 52.0
QL02p087497 Quercus lobata HOM05D000347 ORTHO05D000694 5.2e-08 60.5 57 54.4
CANSAT11G2525 Cannabis sativa HOM05D000347 ORTHO05D000694 6.8e-08 60.1 53 56.6
Cc06_g08870 Coffea canephora HOM05D000347 ORTHO05D000694 6.8e-08 60.1 50 58.0
CSS0019738 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D000694 8.9e-08 59.7 61 47.5
Dinv30567 Davidia involucrata HOM05D000347 ORTHO05D000694 8.9e-08 59.7 32 75.0
Manes.14G129500 Manihot esculenta HOM05D000347 ORTHO05D000694 8.9e-08 59.7 35 74.3
Actinidia40449 Actinidia chinensis HOM05D000347 ORTHO05D000694 1.2e-07 59.3 52 55.8
Haze_25632 Corylus avellana HOM05D000347 ORTHO05D000694 1.2e-07 59.3 53 58.5
Potri.006G154300 Populus trichocarpa HOM05D000347 ORTHO05D000694 1.2e-07 59.3 47 57.4
Hund09150 Selenicereus undatus HOM05D000347 ORTHO05D000694 1.2e-07 59.3 47 57.4
CSS0026756 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D000694 1.5e-07 58.9 59 49.2
Eucgr.C04174 Eucalyptus grandis HOM05D000347 ORTHO05D000694 1.5e-07 58.9 32 75.0
PSO170G4102 Papaver somniferum HOM05D000347 ORTHO05D000694 1.5e-07 58.9 49 57.1
THA.LOC104815259 Tarenaya hassleriana HOM05D000347 ORTHO05D000694 1.5e-07 58.9 49 53.1
CDE04G1859 Ceratophyllum demersum HOM05D000347 ORTHO05D000694 2.0e-07 58.5 47 61.7
Gohir.A08G239400 Gossypium hirsutum HOM05D000347 ORTHO05D000694 2.0e-07 58.5 41 61.0
Prupe.7G238700 Prunus persica HOM05D000347 ORTHO05D000694 2.0e-07 58.5 53 58.5
COL.COLO4_35186 Corchorus olitorius HOM05D000347 ORTHO05D000694 2.6e-07 58.2 47 61.7
Gorai.004G278000 Gossypium raimondii HOM05D000347 ORTHO05D000694 2.6e-07 58.2 41 61.0
MBI01_g11879_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D000694 2.6e-07 58.2 27 88.9
TWI63G0693 Tripterygium wilfordii HOM05D000347 ORTHO05D000694 2.6e-07 58.2 44 63.6
PSO455G0043 Papaver somniferum HOM05D000347 ORTHO05D000694 3.4e-07 57.8 49 55.1
Phvul.001G235500 Phaseolus vulgaris HOM05D000347 ORTHO05D000694 3.4e-07 57.8 29 79.3
Thecc.09G121700 Theobroma cacao HOM05D000347 ORTHO05D000694 3.4e-07 57.8 46 54.3
Ciclev10008839m.g Citrus clementina HOM05D000347 ORTHO05D000694 4.4e-07 57.4 50 62.0
Oeu018457.1 Olea europaea HOM05D000347 ORTHO05D000694 4.4e-07 57.4 47 55.3
Atru.chr7.1227 Acer truncatum HOM05D000347 ORTHO05D000694 5.8e-07 57.0 34 70.6
MD02G1036700 Malus domestica HOM05D000347 ORTHO05D000694 5.8e-07 57.0 45 62.2
VMungo1383G0074 Vigna mungo HOM05D000347 ORTHO05D000694 5.8e-07 57.0 45 57.8
ClCG06G010870 Citrullus lanatus HOM05D000347 ORTHO05D000694 7.6e-07 56.6 52 51.9
DCAR_017840 Daucus carota HOM05D000347 ORTHO05D000694 7.6e-07 56.6 34 64.7
Gohir.D08G260100 Gossypium hirsutum HOM05D000347 ORTHO05D000694 7.6e-07 56.6 41 58.5
Sp2g15150 Schrenkiella parvula HOM05D000347 ORTHO05D000694 7.6e-07 56.6 65 44.6
GSVIVG01015493001 Vitis vinifera HOM05D000347 ORTHO05D000694 7.6e-07 56.6 34 73.5
CDE06G2255 Ceratophyllum demersum HOM05D000347 ORTHO05D000694 9.9e-07 56.2 27 85.2
CDE07G2022 Ceratophyllum demersum HOM05D000347 ORTHO05D000694 9.9e-07 56.2 27 85.2
Hma1.2p1_0018F.1_g012740 Hydrangea macrophylla HOM05D000347 ORTHO05D000694 9.9e-07 56.2 32 71.9
GSVIVG01013623001 Vitis vinifera HOM05D003369 ORTHO05D016673 9.9e-07 56.2 58 46.6
CsaV3_1G029780 Cucumis sativus L. HOM05D000347 ORTHO05D000694 1.3e-06 55.8 48 56.2
Glyma.11G222000 Glycine max HOM05D000347 ORTHO05D000694 1.3e-06 55.8 30 73.3
Glyma.18G035500 Glycine max HOM05D000347 ORTHO05D000694 1.3e-06 55.8 30 73.3
RcHm_v2.0_Chr2g0089221 Rosa chinensis HOM05D000347 ORTHO05D000694 1.3e-06 55.8 39 66.7
Ah.09g225660 Amaranthus hybridus HOM05D000347 ORTHO05D000694 1.7e-06 55.5 60 45.0
ATR1156G081 Amborella trichopoda HOM05D000347 ORTHO05D000694 1.7e-06 55.5 25 88.0
Aa31LG2G6410 Aethionema arabicum HOM05D000347 ORTHO05D000694 2.2e-06 55.1 48 47.9
MD15G1176800 Malus domestica HOM05D000347 ORTHO05D000694 2.2e-06 55.1 45 60.0
Nitab4.5_0005520g0040 Nicotiana tabacum HOM05D000347 ORTHO05D000694 2.2e-06 55.1 46 47.8
Sc08g0006780 Simmondsia chinensis HOM05D000347 ORTHO05D000694 2.2e-06 55.1 36 63.9
Carub.0005s0377 Capsella rubella HOM05D000347 ORTHO05D000694 2.9e-06 54.7 49 51.0
Ca_21703_v3 Cicer arietinum L. HOM05D000347 ORTHO05D000694 2.9e-06 54.7 61 44.3
MELO3C026640.2 Cucumis melo HOM05D000347 ORTHO05D000694 2.9e-06 54.7 48 56.2
Duzib150G0999 Durio zibethinus HOM05D000347 ORTHO05D000694 2.9e-06 54.7 65 38.5
Psat4g039920 Pisum sativum HOM05D000347 ORTHO05D000694 2.9e-06 54.7 32 71.9
Hund18380 Selenicereus undatus HOM05D000347 ORTHO05D000694 2.9e-06 54.7 53 49.1
AL3G40470 Arabidopsis lyrata HOM05D000347 ORTHO05D000694 3.7e-06 54.3 56 42.9
Lj4g0013008 Lotus japonicus HOM05D000347 ORTHO05D000694 3.7e-06 54.3 60 40.0
Nitab4.5_0001164g0020 Nicotiana tabacum HOM05D000347 ORTHO05D000694 3.7e-06 54.3 46 47.8
Peaxi162Scf00984g00210 Petunia axillaris HOM05D000347 ORTHO05D000694 3.7e-06 54.3 46 47.8
Sed0018104 Sechium edule HOM05D000347 ORTHO05D000694 3.7e-06 54.3 34 61.8
SEGI_30552 Sequoiadendron giganteum HOM05D000347 ORTHO05D000694 3.7e-06 54.3 33 66.7
Aa31LG9G4600 Aethionema arabicum HOM05D000347 ORTHO05D000694 4.9e-06 53.9 44 56.8
Ah.08g214030 Amaranthus hybridus HOM05D000347 ORTHO05D000694 4.9e-06 53.9 53 50.9
AUR62011078 Chenopodium quinoa HOM05D000347 ORTHO05D000694 4.9e-06 53.9 24 87.5
AUR62033461 Chenopodium quinoa HOM05D000347 ORTHO05D000694 4.9e-06 53.9 24 87.5
FvH4_1g03830 Fragaria vesca HOM05D000347 ORTHO05D000694 4.9e-06 53.9 34 67.6
Sc18g0000760 Simmondsia chinensis HOM05D000347 ORTHO05D000694 4.9e-06 53.9 52 50.0
TPR.G10708 Trifolium pratense HOM05D000347 ORTHO05D000694 4.9e-06 53.9 49 51.0
vmacro06168 Vaccinium macrocarpon HOM05D000347 ORTHO05D000694 4.9e-06 53.9 24 87.5
Cpa.g.sc75.73 Carica papaya HOM05D000347 ORTHO05D000694 6.4e-06 53.5 27 81.5
Manes.06G053300 Manihot esculenta HOM05D000347 ORTHO05D000694 6.4e-06 53.5 35 62.9
Medtr4g113730 Medicago truncatula HOM05D000347 ORTHO05D000694 6.4e-06 53.5 49 53.1
ATR0001G052 Amborella trichopoda HOM05D000347 ORTHO05D000694 8.4e-06 53.1 31 74.2
CDE06G0624 Ceratophyllum demersum HOM05D000347 ORTHO05D000694 8.4e-06 53.1 27 77.8
CDE06G1926 Ceratophyllum demersum HOM05D000347 ORTHO05D000694 8.4e-06 53.1 27 77.8


User provided reference genes

Program Settings