Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11947 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.4e-24 115.5 63 100.0
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 5.0e-17 90.5 58 91.4
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 3.6e-15 84.3 58 84.5
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 5.1e-14 80.5 61 78.7
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 5.1e-14 80.5 58 74.1
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 5.1e-14 80.5 58 75.9
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 1.9e-13 78.6 58 74.1
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.5e-13 78.2 58 75.9
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 3.3e-13 77.8 58 74.1
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 3.3e-13 77.8 58 74.1
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 3.3e-13 77.8 58 72.4
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 3.3e-13 77.8 58 74.1
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 5.7e-13 77.0 58 75.9
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 5.7e-13 77.0 57 75.4
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 7.4e-13 76.6 56 73.2
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 9.7e-13 76.3 57 73.7
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 9.7e-13 76.3 58 70.7
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 2.2e-12 75.1 58 72.4
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 2.8e-12 74.7 57 70.2
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 2.8e-12 74.7 58 67.2
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 3.7e-12 74.3 58 69.0
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 4.8e-12 73.9 58 70.7
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 4.8e-12 73.9 58 69.0
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.1e-11 72.8 58 70.7
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.4e-11 72.4 58 67.2
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.4e-11 72.4 58 67.2
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.4e-11 72.4 58 70.7
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 3.1e-11 71.2 58 70.7
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 3.1e-11 71.2 57 66.7
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.1e-11 70.9 58 70.7
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 4.1e-11 70.9 58 67.2
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.3e-11 70.5 58 65.5
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 9.1e-11 69.7 58 67.2
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 9.1e-11 69.7 58 69.0
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 9.1e-11 69.7 58 69.0
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 9.1e-11 69.7 58 69.0
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 1.5e-10 68.9 58 65.5
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 1.5e-10 68.9 58 65.5
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.6e-10 68.2 58 62.1
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 2.6e-10 68.2 58 67.2
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 3.4e-10 67.8 58 63.8
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 3.4e-10 67.8 58 63.8
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 3.4e-10 67.8 58 67.2
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 3.4e-10 67.8 58 67.2
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 3.4e-10 67.8 58 67.2
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 3.4e-10 67.8 58 67.2
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 3.4e-10 67.8 57 61.4
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 4.5e-10 67.4 58 63.8
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 4.5e-10 67.4 58 67.2
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 5.9e-10 67.0 58 67.2
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 5.9e-10 67.0 58 67.2
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 5.9e-10 67.0 58 63.8
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 7.7e-10 66.6 58 63.8
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 7.7e-10 66.6 58 63.8
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 7.7e-10 66.6 58 67.2
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.0e-09 66.2 58 62.1
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.0e-09 66.2 58 65.5
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.0e-09 66.2 57 68.4
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 1.7e-09 65.5 57 68.4
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.2e-09 65.1 58 62.1
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 2.9e-09 64.7 58 63.8
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 2.9e-09 64.7 58 67.2
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.9e-09 64.7 58 63.8
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 5.0e-09 63.9 58 63.8
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 5.0e-09 63.9 58 65.5
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 5.0e-09 63.9 57 66.7
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 6.5e-09 63.5 57 57.9
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 6.5e-09 63.5 56 64.3
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 8.5e-09 63.2 58 62.1
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 8.5e-09 63.2 58 60.3
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 8.5e-09 63.2 58 63.8
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 1.1e-08 62.8 57 59.6
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.4e-08 62.4 58 63.8
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 1.4e-08 62.4 57 61.4
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 1.9e-08 62.0 58 60.3
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.5e-08 61.6 58 60.3
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 3.2e-08 61.2 58 58.6
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 4.2e-08 60.8 58 58.6
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 4.2e-08 60.8 58 58.6
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 5.5e-08 60.5 58 60.3
SalBow8G1020 Salvia bowleyana HOM05D003772 ORTHO05D004509 5.5e-08 60.5 58 58.6
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 5.5e-08 60.5 58 60.3
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 7.2e-08 60.1 58 58.6
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 7.2e-08 60.1 58 58.6
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 7.2e-08 60.1 58 60.3
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 7.2e-08 60.1 57 61.4
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 7.2e-08 60.1 58 60.3
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 7.2e-08 60.1 57 61.4
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 9.4e-08 59.7 58 58.6
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 9.4e-08 59.7 57 59.6
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 9.4e-08 59.7 58 60.3
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 9.4e-08 59.7 58 60.3
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 1.2e-07 59.3 58 55.2
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 1.2e-07 59.3 57 61.4
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 1.2e-07 59.3 58 58.6
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 1.6e-07 58.9 57 64.9
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.6e-07 58.9 58 60.3
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 1.6e-07 58.9 57 61.4
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 1.6e-07 58.9 58 60.3
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 1.6e-07 58.9 58 56.9
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.6e-07 58.9 58 58.6
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.6e-07 58.9 58 58.6
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 2.1e-07 58.5 58 58.6
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 2.7e-07 58.2 57 61.4
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 2.7e-07 58.2 58 56.9
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 2.7e-07 58.2 58 55.2
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 2.7e-07 58.2 57 59.6
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.6e-07 57.4 58 58.6
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.6e-07 57.4 44 68.2
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 6.1e-07 57.0 58 60.3
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 7.9e-07 56.6 58 56.9
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 7.9e-07 56.6 58 56.9
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 7.9e-07 56.6 58 56.9
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 7.9e-07 56.6 58 56.9
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 7.9e-07 56.6 58 56.9
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 7.9e-07 56.6 58 55.2
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 7.9e-07 56.6 57 59.6
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 1.0e-06 56.2 58 58.6
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.0e-06 56.2 57 57.9
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 3.0e-06 54.7 57 54.4
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 57.9
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 6.7e-06 53.5 57 56.1
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 8.8e-06 53.1 58 53.4
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 8.8e-06 53.1 57 57.9
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 8.8e-06 53.1 64 54.7


User provided reference genes

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